Package: GeneRegionScan
Version: 1.46.0
Date: 2009-10-16
Title: GeneRegionScan
Author: Lasse Folkersen, Diego Diez
Maintainer: Lasse Folkersen <lasfol@cbs.dtu.dk>
Depends: methods, Biobase (>= 2.5.5), Biostrings
Imports: S4Vectors (>= 0.9.25), Biobase (>= 2.5.5), affxparser,
        RColorBrewer, Biostrings
Suggests: BSgenome, affy, AnnotationDbi
LazyLoad: yes
Description: A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.  
License: GPL (>= 2)
biocViews: Microarray, DataImport, SNP, OneChannel, Visualization
git_url: https://git.bioconductor.org/packages/GeneRegionScan
git_branch: RELEASE_3_12
git_last_commit: 43d8744
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 01:56:32 UTC; biocbuild
Built: R 4.0.3; ; 2020-10-28 14:17:09 UTC; windows
