htx_query_by_text {HumanTranscriptomeCompendium} | R Documentation

## subset compendium through keyword lookup

### Description

subset compendium through keyword lookup

### Usage

    htx_query_by_text(query, ..., tryGrep = TRUE, ignore.case = TRUE)

### Arguments

`query` | character(1) to be found in ls(ssrch::kw2docs(get_ds4841()))
`...` | passed to 'htx_query_by_study_accession'
`tryGrep` | logical(1) if TRUE, 'query' does not match any keyword directly, it will be treated as a regular expression and the vector of keywords will be grepped for pattern 'query'; defaults to TRUE
`ignore.case` | logical(1) used when tryGrep is TRUE, defaults to TRUE

### Value

SummarizedExperiment instance

### Note

The DocSet instance returned by 'get_ds4841()' is used. Lookups are case-sensitive. Look carefully at note for 'htx_query_by_study_accession' to understand logic of incrementing metadata on a given input SummarizedExperiment.

### Examples

    htx_query_by_text("HNRNPC")

[Package HumanTranscriptomeCompendium version 1.6.0 Index]