PAscore {InPAS} | R Documentation

## calculate the CP score

### Description

calculate the CP score by PWM

### Usage

    PAscore(seqname, pos, str, idx, PWM, genome, ups = 50, dws = 50)

### Arguments

`seqname` | sequence names
`pos` | genomic positions
`str` | strands
`idx` | offset postion
`PWM` | polyA position weight matrix
`genome` | an object of BSgenome
`ups` | upstream base
`dws` | downstream base

### Value

idx list after filter

### Author(s)

Jianhong Ou

### See Also

`PAscore2`

[Package InPAS version 1.22.0 Index]