UTR3usage {InPAS} | R Documentation

## calculate the usage of long and short form of UTR3

### Description

calculate the usage of long and short form of UTR3 for the results of CPsites

### Usage

    UTR3usage(CPsites, coverage, hugeData, BPPARAM = NULL, phmm = FALSE)

### Arguments

`CPsites` | outputs of CPsites
`coverage` | coverage for each sample, outputs of coverageFromBedGraph
`hugeData` | is this dataset consume too much memory? if it is TRUE, the coverage will be saved into tempfiles.
`BPPARAM` | An optional `BiocParallelParam` instance determining the parallel back-end to be used during evaluation, or a list of BiocParallelParam instances, to be applied in sequence for nested calls to bplapply.
`phmm` | prepare data for singleSample analysis? default is FALSE

### Value

GRanges object

### Author(s)

Jianhong Ou

### See Also

`CPsites`

[Package InPAS version 1.22.0 Index]