utr3.mm10 {InPAS} | R Documentation

## 3'UTR annotation for mm10 obtained from utr3Annotation

### Description

3'UTR annotation obtained from utr3Annotation by TxDb.Mmusculus.UCSC.mm10.knownGene and org.Mm.eg.db

### Usage

    data(utr3.mm10)

### Format

GRanges with slot start holding the start position of the 3'UTR, slot end holding the end position of the 3'UTR, slot names holding transcripts and gene names of 3'UTR, slot seqnames holding the chromosome location where the 3'UTR is located and slot strand for strand of 3'UTR. In addition, the following variables are included.

`feature`

  should be unknown or proximalCP_XXXXXXXX

`id`

  should be utr3 or next.exon.gap

`exon`

  exon id

`transcript`

  trnscript id

`gene`

  entriz gene id

`symbol`

  gene symbol

### Details

used in the examples Annotation data obtained by: library(TxDb.Mmusculus.UCSC.mm10.knownGene)

library(org.Mm.eg.db)

utr3Annotation(TxDb.Mmusculus.UCSC.mm10.knownGene, "org.Mm.egSYMBOL")

### Value

an object of GRanges.

### Examples

        data(utr3.mm10)
        head(utr3.mm10)

[Package InPAS version 1.22.0 Index]