on_plate_selection {MACSQuantifyR} | R Documentation

## Sort experimental design on graphical 96-well-plate

### Description

Loads user's data, prompt a graphical representation of a 96 well plate and let the user select where the duplicates of each condition were placed. Use for reordering excel file. Plate image with selection can also be saved in the form of a png file in the "specified_path/output_MQ" directory.

### Usage

    on_plate_selection(MACSQuant,number_of_replicates,number_of_conditions,
    control=FALSE,save.files=FALSE)

### Arguments

`MACSQuant` | object of class MACSQuant resulting of the function load_maxQuant(). Contains the original data table
`number_of_replicates` | For each condition, the number of duplicates (must be the same for all conditions)
`number_of_conditions` | The number of conditions tested (eg: Drug 1 alone, Drug 2 alone)
`control` | Is there a control in this experiment (eg: Staurosporin)
`save.files` | Used to save the image in the output folder

### Value

A formatted report file along with intermediates results

### Examples

    print("run manually, requires user input")
    # on_plate_selection(MACSQuant,3,5)
    # let you select 5 conditions of 3 replicates each

[Package MACSQuantifyR version 1.4.0 Index]