CpGs_in_MEAT2.0 {MEAT} | R Documentation

## Description of the CpGs used in MEAT2.0

### Description

Detailed information on the 156 CpGs automatically selected by the elastic net model.

### Usage

    CpGs_in_MEAT2.0

### Format

A data frame with 157 rows and 6 variables:

CpGs

  CpG name

Coefficient

  Weight given by the elastic net model to the CpG in the to estimate epigenetic age

Chromosome

  Chromosome where the CpG is located

Position

  Position in bp where the CpG is located (human genome build version hg38)

Gene

  Gene annotated to the CpG. Each CpG was annotated to one or more genes using the annotation file from Zhou et al. to which we added annotation to long-range interaction promoters using chromatin states in male skeletal muscle from the Roadmap Epigenomics Project and GeneHancer information from the Genome Browser (hg38).

Chromatin_state_male_SM

  Chromatin state in male skeletal muscle from the the Roadmap Epigenomics Project)

### Source

https://www.biorxiv.org/content/10.1101/2020.09.28.315838v1

[Package MEAT version 1.2.2 Index]