printInformationSelect {MetCirc} | R Documentation

## Display information on connected features of selected features

### Description

Displays information on connected features of selected features.

### Usage

    printInformationSelect(
      select,
      spectra = NULL,
      linkDfInd,
      linkDf,
      similarityMatrix,
      roundDigits = 2
    )

### Arguments

`select` | 'character', obtained from groupname, 'character' of selected feature
`spectra` | 'MSpectra' object containing spectra that are compared in 'similarityMatrix'
`linkDfInd` | 'numeric' indices of selected features
`linkDf` | 'data.frame' that contains information of linked features for given thresholds
`similarityMatrix` | 'matrix' that is used to get information on the degree of similarity, 'similarityMat' is an ordered version of a similarity matrix, see '?orderSimilarityMatrix'
`roundDigits` | 'numeric', how many digits should be displayed?

### Details

'printInformationSelect' is for internal use.

### Value

'character' that is in HTML format

### Author(s)

Thomas Naake, thomasnaake@googlemail.com

### Examples

    data("spectra", package = "MetCirc")
    similarityMat <- compare_Spectra(spectra_tissue[1:10],
        fun = normalizeddotproduct, binSize = 0.01)
    linkDf <- createLinkDf(similarityMatrix = similarityMat,
        spectra = spectra_tissue[1:10],
        condition = c("SPL", "LIM", "ANT", "STY"), lower = 0.5, upper = 1)
    ## cut link data.frame (here: only display links between groups)
    linkDf_cut <- cutLinkDf(linkDf, type = "inter")
    groupname <- c(as.character(linkDf_cut[, "spectrum1"]),
                as.character(linkDf_cut[, "spectrum2"]))
    groupname <- unique(groupname)
    ## arbitrarily select a feature
    ind <- 2
    linkDfInds <- getLinkDfIndices(groupname[ind], linkDf_cut)
    MetCirc:::printInformationSelect(groupname[ind],
        spectra = spectra_tissue[1:10], linkDfInd = linkDfInds,
        linkDf = linkDf_cut, similarityMatrix = similarityMat)

[Package MetCirc version 1.20.0 Index]