multi_compare {MicrobiotaProcess} | R Documentation

## a container for performing two or more sample test.

### Description

a container for performing two or more sample test.

### Usage

    multi_compare(
      fun = wilcox.test,
      data,
      feature,
      factorNames,
      subgroup = NULL,
      ...
    )

### Arguments

`fun` | character, the method for test, optional ""
`data` | data.frame, nrow sample * ncol feature+factorNames.
`feature` | vector, the features wanted to test.
`factorNames` | character, the name of a factor giving the corresponding groups.
`subgroup` | vector, the names of groups, default is NULL.
`...,` | additional arguments for fun.

### Value

the result of fun, if fun is wilcox.test, it will return the list with class "htest".

### Author(s)

Shuangbin Xu

### Examples

    datest <- data.frame(A=rnorm(1:10,mean=5),
                         B=rnorm(2:11, mean=6),
                         group=c(rep("case",5),rep("control",5)))
    head(datest)
    multi_compare(fun=wilcox.test,data=datest,
                  feature=c("A", "B"),factorNames="group")
    da2 <- data.frame(A=rnorm(1:15,mean=5),
                      B=rnorm(2:16,mean=6),
                      group=c(rep("case1",5),rep("case2",5),rep("control",5)))
    multi_compare(fun=wilcox.test,data=da2,
                  feature=c("A", "B"),factorNames="group",
                  subgroup=c("case1", "case2"))

[Package MicrobiotaProcess version 1.2.2 Index]