build_tree {MicrobiotaProcess} | R Documentation

## building tree

### Description

The function can be used to building tree.

### Usage

    build_tree(seqs, ...)

    ## S4 method for signature 'DNAStringSet'
    build_tree(seqs, ...)

    ## S4 method for signature 'DNAbin'
    build_tree(seqs, ...)

    ## S4 method for signature 'character'
    build_tree(seqs, ...)

### Arguments

`seqs` | DNAStringSet or DNAbin, the object of R.
`...,` | additional parameters, see also `AlignSeqs`.

### Value

the phylo class of tree.

### Author(s)

Shuangbin Xu

### Examples

    seqtabfile <- system.file("extdata", "seqtab.nochim.rds",
                              package="MicrobiotaProcess")
    seqtab <- readRDS(seqtabfile)
    refseq <- colnames(seqtab)
    names(refseq) <- paste0("OTU_",seq_len(length(refseq)))
    # refseq <- Biostrings::DNAStringSet(refseq)
    # tree <- build_tree(refseq)
    # or
    # tree <- build_tree(refseq)

[Package MicrobiotaProcess version 1.2.2 Index]