as.data.frame.diffAnalysisClass {MicrobiotaProcess} | R Documentation

## get the table of diffAnalysisClass

### Description

get the table of diffAnalysisClass

### Usage

    ## S3 method for class 'diffAnalysisClass'
    as.data.frame(x, ...)

    ## S3 method for class 'alphasample'
    as.data.frame(x, ...)

    ## S3 method for class 'diffAnalysisClass'
    as.data.frame(x, ...)

    ## S3 method for class 'alphasample'
    as.data.frame(x, ...)

### Arguments

`x` | object, diffAnalysisClass
`...,` | additional parameters

### Value

a data.frame contained results of diff_analysis

### Examples

    data(kostic2012crc)
    kostic2012crc
    head(phyloseq::sample_data(kostic2012crc),3)
    kostic2012crc <- phyloseq::rarefy_even_depth(kostic2012crc,rngseed=1024)
    table(phyloseq::sample_data(kostic2012crc)$DIAGNOSIS)
    set.seed(1024)
    diffres <- diff_analysis(kostic2012crc, classgroup="DIAGNOSIS",
                            mlfun="lda", filtermod="fdr",
                            firstcomfun = "kruskal.test",
                            firstalpha=0.05, strictmod=TRUE,
                            secondcomfun = "wilcox.test",
                            subclmin=3, subclwilc=TRUE,
                            secondalpha=0.01, lda=3)
    restab <- as.data.frame(diffres)
    head(restab)

[Package MicrobiotaProcess version 1.2.2 Index]