get_dist {MicrobiotaProcess} | R Documentation

## calculate distance

### Description

calculate distance

### Usage

    get_dist(obj, ...)

    ## S3 method for class 'data.frame'
    get_dist(
      obj,
      distmethod = "euclidean",
      taxa_are_rows = FALSE,
      sampleda = NULL,
      tree = NULL,
      method = "hellinger",
      ...
    )

    ## S3 method for class 'phyloseq'
    get_dist(obj, distmethod = "euclidean", method = "hellinger", ...)

### Arguments

`obj` | phyloseq, phyloseq class or data.frame nrow sample * ncol feature.
`...,` | additional parameters.
`distmethod` | character, default is "euclidean", see also `distanceMethodList`
`taxa_are_rows` | logical, default is FALSE.
`sampleda` | data.frame, nrow sample * ncol factors.
`tree` | object, the phylo class, see also `as.phylo`.
`method` | character, default is hellinger, see alse `decostand`

### Value

distance class contianed distmethod and originalD attr

### See Also

`distance`

### Examples

    data(test_otu_data)
    distclass <- get_dist(test_otu_data)
    hcsample <- get_clust(distclass)

[Package MicrobiotaProcess version 1.2.2 Index]