MinDistExperiment-class {MinimumDistance} | R Documentation

## Class and methods for MinDistExperiment

### Description

Class and methods for MinDistExperiment

### Usage

    ## S4 method for signature 'MinDistExperiment'
    show(object)

    ## S4 method for signature 'MinDistExperiment'
    pedigree(object)

    ## S4 replacement method for signature 'MinDistExperiment'
    pedigree(object) <- value

    ## S4 method for signature 'MinDistExperiment'
    mindist(object)

    ## S4 replacement method for signature 'MinDistExperiment,ANY'
    mindist(object) <- value

    ## S4 method for signature 'MinDistExperiment,ANY,ANY,ANY'
    x[i, j, ..., drop = FALSE]

    ## S4 method for signature 'MinDistExperiment'
    offspring(object)

    ## S4 method for signature 'MinDistExperiment'
    father(object)

    ## S4 method for signature 'MinDistExperiment'
    mother(object)

    ## S4 method for signature 'MinDistExperiment'
    segment2(object, param = MinDistParam())

    ## S4 method for signature 'RangedSummarizedExperiment'
    father(object)

    ## S4 method for signature 'RangedSummarizedExperiment'
    mother(object)

    ## S4 method for signature 'RangedSummarizedExperiment'
    offspring(object)

### Arguments

`object` | a `MinDistExperiment` object
`value` | a `ParentOffspring` object
`x` | a `MinDistExperiment` object
`i` | a numeric-vector for indexing the rows (optional)
`j` | a numeric-vector for indexing the columns (optional)
`...` | additional arguments propogated to subsetting methods for `RangedSummarizedExperiment`
`drop` | logical. Whether to simplify a one-row or one-column matrix to a vector. In most cases, this should always be FALSE.
`param` | a `MinDistParam` object

### Slots

`mindist`

  a matrix

`pedigree`

  a `ParentOffspring` object

[Package MinimumDistance version 1.34.0 Index]