plot_river {MutationalPatterns} | R Documentation

## Plot a riverplot

### Description

Function to plot a SNV mutation matrix as a riverplot. This is especially usefull when looking at a wide mutational context

### Usage

    plot_river(mut_matrix, condensed = FALSE)

### Arguments

`mut_matrix` | Matrix containing mutation counts.
`condensed` | More condensed plotting format. Default = F.

### Value

A ggplot object

### See Also

`mut_matrix`, `plot_96_profile`, `plot_profile_heatmap`

### Examples

    ## See the 'mut_matrix()' examples for how we obtained the
    ## mutation matrix information:
    ## Get regular matrix
    mut_mat <- readRDS(system.file("states/mut_mat_data.rds",
      package = "MutationalPatterns"
    ))

    ## Create heatmap of profile
    plot_river(mut_mat[,c(1,4)])

    ## Get extended matrix
    mut_mat_extended <- readRDS(system.file("states/mut_mat_data_extended.rds",
      package = "MutationalPatterns"
    ))

    ## Create heatmap of extended profile
    plot_river(mut_mat_extended[,c(1,4)])

    ## Create condensed version of riverplot
    plot_river(mut_mat_extended[,c(1,4)], condensed = TRUE)

[Package MutationalPatterns version 3.0.1 Index]