plot_main_indel_contexts {MutationalPatterns} | R Documentation

## Plot the main indel contexts

### Description

Plot the main indel contexts

### Usage

    plot_main_indel_contexts(counts, same_y = FALSE)

### Arguments

`counts` | A tibble containing the number of indels per COSMIC context.
`same_y` | A boolean describing whether the same y axis should be used for all samples.

### Details

Plots the number of indels per main COSMIC context per sample. The contexts are not subdivided into the number of repeats/microhomology length. It takes a tibble with counts as its input. This tibble can be generated by count_indel_contexts Each sample is plotted in a separate facet. The same y axis can be used for all samples or a separate y axis can be used.

### Value

A ggplot figure.

### See Also

`count_indel_contexts`, `plot_indel_contexts`

Other Indels: `count_indel_contexts()`, `get_indel_context()`, `plot_compare_indels()`, `plot_indel_contexts()`

### Examples

    ## Get The indel counts
    ## See 'count_indel_contexts()' for more info on how to do this.
    indel_counts <- readRDS(system.file("states/blood_indel_counts.rds",
      package = "MutationalPatterns"
    ))

    ## Plot contexts
    plot_main_indel_contexts(indel_counts)

    ## Use the same y axis for all samples.
    plot_main_indel_contexts(indel_counts, same_y = TRUE)

[Package MutationalPatterns version 3.0.1 Index]