plot_96_profile {MutationalPatterns} | R Documentation

## Plot 96 trinucleotide profile

### Description

Plot relative contribution of 96 trinucleotides

### Usage

    plot_96_profile(mut_matrix, colors = NA, ymax = 0.2, condensed = FALSE)

### Arguments

`mut_matrix` | 96 trinucleotide profile matrix
`colors` | Optional 6 value color vector.
`ymax` | Y axis maximum value, default = 0.2
`condensed` | More condensed plotting format. Default = F.

### Value

96 trinucleotide profile plot

### See Also

`mut_matrix`, `plot_profile_heatmap`, `plot_river`

### Examples

    ## See the 'mut_matrix()' example for how we obtained the
    ## mutation matrix information:
    mut_mat <- readRDS(system.file("states/mut_mat_data.rds",
      package = "MutationalPatterns"
    ))

    ## Plot the 96-profile of three samples
    plot_96_profile(mut_mat[, c(1, 4, 7)])

    ## Plot a condensed profile
    plot_96_profile(mut_mat[, c(1, 4, 7)], condensed = TRUE)

    ## It's also possible to plot signatures, for example signatures
    ## generated with NMF
    ## See 'extract_signatures()' on how we obtained these signatures.
    nmf_res <- readRDS(system.file("states/nmf_res_data.rds",
      package = "MutationalPatterns"
    ))

    ## Optionally, provide signature names
    colnames(nmf_res$signatures) <- c("Signature A", "Signature B")

    ## Generate the plot
    plot_96_profile(nmf_res$signatures)

[Package MutationalPatterns version 3.0.1 Index]