plot_dbs_contexts {MutationalPatterns} | R Documentation

## Plot the DBS contexts

### Description

Plot the DBS contexts

### Usage

    plot_dbs_contexts(counts, same_y = FALSE, condensed = FALSE)

### Arguments

`counts` | A tibble containing the number of DBS per COSMIC context.
`same_y` | A boolean describing whether the same y axis should be used for all samples.
`condensed` | More condensed plotting format. Default = F.

### Details

Plots the number of DBS COSMIC context per sample. It takes a tibble with counts as its input. This tibble can be generated by count_dbs_contexts Each sample is plotted in a separate facet. The same y axis can be used for all samples or a separate y axis can be used.

### Value

A ggplot figure.

### See Also

`count_dbs_contexts`, `plot_main_dbs_contexts`

Other DBS: `count_dbs_contexts()`, `get_dbs_context()`, `plot_compare_dbs()`, `plot_main_dbs_contexts()`

### Examples

    ## Get The dbs counts
    ## See 'count_dbs_contexts()' for more info on how to do this.
    dbs_counts <- readRDS(system.file("states/blood_dbs_counts.rds",
      package = "MutationalPatterns"
    ))

    ## Plot contexts
    plot_dbs_contexts(dbs_counts)

    ## Use the same y axis for all samples.
    plot_dbs_contexts(dbs_counts, same_y = TRUE)

    ## Create a more condensed plot
    plot_dbs_contexts(dbs_counts, condensed = TRUE)

[Package MutationalPatterns version 3.0.1 Index]