count_mbs_contexts {MutationalPatterns} | R Documentation

## Count MBS variants grouped by length.

### Description

Count MBS variants grouped by length.

### Usage

    count_mbs_contexts(vcf_list)

### Arguments

`vcf_list` | GRanges or GRangesList object containing mbs variants.

### Details

Counts the number of mbs grouped by length from a GRanges or GRangesList object containing mbs variants. This is used, since a COSMIC context has to our knowledge not yet been defined. This function applies the count_mbs_contexts_gr function to each gr in its input. It then combines the results in a single tibble and returns this.

### Value

A tibble containing the number of MBS per MBS length per gr.

### See Also

Other MBS: `plot_compare_mbs()`, `plot_mbs_contexts()`

### Examples

    ## Get a GRangesList or GRanges object with mbs variants.
    mbs_grl <- readRDS(system.file("states/blood_grl_mbs.rds",
      package = "MutationalPatterns"
    ))

    # Count the MBSs
    count_mbs_contexts(mbs_grl)

[Package MutationalPatterns version 3.0.1 Index]