segReadsPE-class {PICS} | R Documentation

## Classe and methods for candidate regions from paired-end data

### Description

A segReadsPE object represents a single candoidate region, including all its informative reads and mappability profile.

### Usage

    segReadsPE(yF, yR, yFm, yRm, cF, cR, cFm, cRm, map, chr)

### Arguments

`yF` | A `numeric` vector. Forward reads.
`yR` | A `numeric` vector. Reverse reads.
`yFm` | A `numeric` vector. Forward reads on paired end.
`yRm` | A `numeric` vector. Reverse reads on paired end.
`cF` | A `numeric` vector. Forward reads for the controls.
`cR` | A `numeric` vector. Reverse reads for the controls.
`cFm` | A `numeric` vector. Forward reads on paired end for the controls.
`cRm` | A `numeric` vector. Reverse reads on paired end for the controls.
`map` | A `matrix`. The mappability profile.
`chr` | A `character`. Chromosome name.

### Functions

- `segReadsPE`: `segReadsPE` constructor.

### Note

segReadsPE objects are not meant to be built via the constructors. The constructors are used in `segmentPICS`.

[Package PICS version 2.34.0 Index]