picsFDR {PICS} | R Documentation

## Estimate the FDR

### Description

Estimate the false detection rate for an object of class `pics` or `picsList`.

### Usage

    picsFDR(
      picsIP,
      picsCont,
      filter = list(delta = c(0, Inf), se = c(0, Inf), sigmaSqF = c(0, Inf), sigmaSqR = c(0,
        Inf))
    )

### Arguments

`picsIP` | An object of class `pics` or `picsList` containing the informations for the IP reads.
`picsCont` | An object of class `pics` or `picsList` containing the informations for the control reads
`filter` | A `list` of ranges for filtering regions based on PICS parameters. By default filter is set to `NULL` and all regions are used. delta: Length of the binding sites se: Standard error sigmaSqF: Forward peak variance sigmaSqR: Reverse peak variance

### Value

A `data.frame` with the following columns: FDR, score, N

### See Also

picsList pics

[Package PICS version 2.34.0 Index]