plotPCoAPlotly {PathoStat} | R Documentation

## Plot PCoA

### Description

Plot PCoA

### Usage

    plotPCoAPlotly(physeq.input, condition.color.vec,
      condition.color.name = "condition", condition.shape.vec = NULL,
      condition.shape.name = "condition", method = "bray",
      columnTitle = "Title", pc.a = "Axis.1", pc.b = "Axis.2")

### Arguments

`physeq.input` | Input data object that contains the data to be plotted. Required
`condition.color.vec` | color vector. Required
`condition.color.name` | color variable name. Required
`condition.shape.vec` | shape vector. Required
`condition.shape.name` | shape variable name. Required
`method` | which distance metric
`columnTitle` | Title to be displayed at top of heatmap.
`pc.a` | pc.1
`pc.b` | pc.2

### Value

the plot

### Examples

    data_dir_test <- system.file("data", package = "PathoStat")
    pstat_test <- loadPstat(indir=data_dir_test,
    infileName="pstat_data_2_L1.rda")
    plotPCoAPlotly(pstat_test, condition.color.vec = rbinom(33,1,0.5),
    condition.shape.vec = rbinom(33,1,0.5))

[Package PathoStat version 1.16.0 Index]