printLROutput {PhenStat} | R Documentation

## Method "printLROutput"

### Description

Prints out for linear regression output

### Usage

        printLROutput(phenTestResult,phenotypeThreshold=0.01)

### Arguments

`phenTestResult` | instance of the `PhenTestResult` class that comes from the function `testDataset`; mandatory argument
`effectValues` | a vector with genotype effect and standard error for the linear regression; mandatory argument
`phenotypeThreshold` | a numerical value defining the threshold to use in classificationTag; default value 0.01

### Value

Prints out the common part of linear regression output.

### Author(s)

Natalja Kurbatova, Natasha Karp, Jeremy Mason

### References

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410

West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

### See Also

`PhenTestResult`

### Examples

        file <- system.file("extdata", "testLR.csv", package="PhenStat")
        testLR <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'),
                testGenotype="Mock")
        testLR2 <- PhenStat:::LRDataset(testLR,"V2")
        resultLR <- PhenStat:::testDataset(testLR2,
                depVariable="V2",
                method="LR")
        PhenStat:::printLROutput(resultLR)

[Package PhenStat version 2.26.0 Index]