SequenceModRNAStringSetTrack-class {RNAmodR} | R Documentation

## ModRNASequenceTrack

### Description

A `Gviz` compatible `SequenceTrack` for showing modified RNA sequences.

### Usage

    ModRNASequenceTrack(sequence, chromosome, genome, name = "SequenceTrack", ...)

    ## S4 method for signature 'SequenceModRNAStringSetTrack'
    seqnames(x)

    ## S4 method for signature 'SequenceModRNAStringSetTrack'
    seqlevels(x)

### Arguments

`sequence` | A `character` vector or `ModRNAString` object of length one. The sequence to display. See `SequenceTrack`.
`chromosome, genome, name, ...` | See `SequenceTrack`.
`x` | A `SequenceModRNAStringSetTrack` object.

### Value

a `SequenceModRNAStringSetTrack` object

### Slots

`sequence`

  A `ModRNAStringSet` object

### Examples

    seq <- ModRNAStringSet(c(chr1 = paste0(alphabet(ModRNAString()),
                                           collapse = "")))
    st <- ModRNASequenceTrack(seq)
    Gviz::plotTracks(st, chromosome = "chr1",from = 1L, to = 20L)

[Package RNAmodR version 1.4.2 Index]