hcRegions {Repitools} | R Documentation

## Masking files for hg19

### Description

File to mask out areas of the genome that are prone to causing false positives in ChIP-seq and other sequencing based functional assays, as proposed by Pickrell et al. (2011), Bioinformatics 27: 2144-2146, http://eqtl.uchicago.edu/Home.html.

### Usage

    hcRegions

### Format

A GRanges object created using the bedfile provided on http://eqtl.uchicago.edu/Masking/seq.cov1.ONHG19.bed.gz.

### Source

Pickrell et al. (2011), Bioinformatics 27: 2144-2146.

[Package Repitools version 1.36.0 Index]