makeROI {SPLINTER} | R Documentation

## makeROI

### Description

Creates an object to store information about the splice site (region of interest) including flanking regions and alternative splice outcome

### Usage

    makeROI(df, type = "SE")

### Arguments

`df` | data.frame object from `extractSpliceEvents`
`type` | type of splicing event c("SE","RI","MXE","A5SS","A3SS")

### Value

a list containing
(1) type : splice type
(2) name : ID of transcript
(3) roi : GRanges object of splice site
(4) flank : GRanges object of flanking exons of splice site
(5) roi_range : GRangesList of splice site and it's alternative outcome based on `type`

### Author(s)

Diana Low

### Examples

    single_record<-splice_data$data[which(grepl("Prmt5",splice_data$data$Symbol)),]
    roi <- makeROI(single_record,type="SE")

[Package SPLINTER version 1.16.0 Index]