eventOutcomeTranslate {SPLINTER} | R Documentation

## eventOutcomeTranslate

### Description

translates sequences, reports if NMD or NTC

### Usage

    eventOutcomeTranslate(
      seq1,
      genome,
      direction = FALSE,
      fullseq = TRUE,
      verbose = FALSE
    )

### Arguments

`seq1` | GRangesList
`genome` | BSGenome object
`direction` | logical. Report direction of sequence change.
`fullseq` | logical. Output full AA sequence.
`verbose` | logical. turn messages on/off.

### Value

list of translated sequences

### Author(s)

Diana LOW

### Examples

    suppressMessages(library(BSgenome.Mmusculus.UCSC.mm9))
    bsgenome<-BSgenome.Mmusculus.UCSC.mm9
    translation_results<-eventOutcomeTranslate(compatible_cds,genome=bsgenome,
     direction=TRUE)

[Package SPLINTER version 1.16.0 Index]