get_enrichment {STRINGdb} | R Documentation

## get_enrichment

### Description

Returns the enrichment in pathways of the vector of STRING proteins that is given in input.

### Usage

    ## S4 method for signature 'STRINGdb'
    get_enrichment(string_ids, category = "Process", methodMT = "fdr", iea = TRUE, minScore=NULL)

### Arguments

`string_ids` | a vector of STRING identifiers.
`category` | category for which to compute the enrichment (i.e. "Process", "Component", "Function", "KEGG", "Pfam", "InterPro"). The default category is "Process".
`methodMT` | method to be used for the multiple testing correction. (i.e. "fdr", "bonferroni"). The default is "fdr".
`iea` | specify whether you also want to use electronic inference annotations
`minScore` | with Tissue and Disease categories is possible to filter the annotations having an annotation score higher than this threshold (from 0 to 5)

### Value

Data frame containing the enrichment in pathways of the vector of STRING proteins that is given in input.

### Author(s)

Andrea Franceschini

[Package STRINGdb version 2.2.2 Index]