unifyProteinGroupLabels {SWATH2stats} | R Documentation

## Unify the protein group labels.

### Description

Unify the protein group labels (2/ProteinA/ProteinB and 2/ProteinB/ProteinA) to one common label (e.g. 2/ProteinA/ProteinB)

### Usage

    unifyProteinGroupLabels(data, column = "ProteinName")

### Arguments

`data` | A data frame containing SWATH data.
`column` | Which column to use for unifying the protein group identifiers.

### Value

Returns a data frame with the unififed protein labels.

### Author(s)

Moritz Heusel

### Examples

     data("OpenSWATH_data", package="SWATH2stats")
     data("Study_design", package="SWATH2stats")
     data <- sample_annotation(OpenSWATH_data, Study_design)
     data.filtered.decoy <- filter_mscore(data, 0.01)
     data.unified <- unifyProteinGroupLabels(data.filtered.decoy)

[Package SWATH2stats version 1.20.1 Index]