calculateCoveredProtein {SubCellBarCode} | R Documentation

## Evaluate marker protein coverage

### Description

Given the proteomics data, number of overlapped marker proteins is calculated. Bar plot for each compartment is plotted.

### Usage

    calculateCoveredProtein(proteinIDs, markerproteins)

### Arguments

`proteinIDs` | character; gene symbol id
`markerproteins` | character; 3365 proteins gene symbol ids

### Value

covered.proteins

### Examples

    {

    df <- loadData(SubCellBarCode::hcc827Ctrl)

    c.prots <- calculateCoveredProtein(rownames(df), markerProteins[,1])
    }

[Package SubCellBarCode version 1.6.0 Index]