sumProbability {SubCellBarCode} | R Documentation

## Sum compartment test data probabilities to neighborhood probabilities

### Description

Compartment levels classifications on the test data are summed up to associated neighborhood levels. It is a helper function.

### Usage

    sumProbability(df)

### Arguments

`df` | data.frame; test data classifications at the neighborhood level and probablity vectors for each protein.

### Value

summed.df

### Examples

    {

    #create mock data
    df <- data.frame(Protein = "TP53",
    svm.pred = "N1",
    S1 = as.numeric(0.02),
    S2 = as.numeric(0.02),
    S3 = as.numeric(0.02),
    S4 = as.numeric(0.02),
    N1 = as.numeric(0.72),
    N2 = as.numeric(0.02),
    N3 = as.numeric(0.02),
    N4 = as.numeric(0.02),
    C1 = as.numeric(0.02),
    C2 = as.numeric(0.02),
    C3 = as.numeric(0.02),
    C4 = as.numeric(0.02),
    C5 = as.numeric(0.02),
    M1 = as.numeric(0.02),
    M2 = as.numeric(0.02))

    rownames(df) <- "TP53"

    sum.df <- sumProbability(df)

    }

[Package SubCellBarCode version 1.6.0 Index]