mergeProbability {SubCellBarCode} | R Documentation

## Merge compartment probabilities to neighborhood probabilities

### Description

Compartment levels classifications are summed up to associated neighborhood levels. It is a helper function.

### Usage

    mergeProbability(df)

### Arguments

`df` | data.frame; all predictions at the neighborhood level and probablity vectors for each protein

### Value

merged.df

### Examples

    {

    #create mock data
    df <- data.frame(Protein = "TP53",
    S1 = as.numeric(0.02),
    S2 = as.numeric(0.02),
    S3 = as.numeric(0.02),
    S4 = as.numeric(0.02),
    N1 = as.numeric(0.72),
    N2 = as.numeric(0.02),
    N3 = as.numeric(0.02),
    N4 = as.numeric(0.02),
    C1 = as.numeric(0.02),
    C2 = as.numeric(0.02),
    C3 = as.numeric(0.02),
    C4 = as.numeric(0.02),
    C5 = as.numeric(0.02),
    M1 = as.numeric(0.02),
    M2 = as.numeric(0.02))

    rownames(df) <- "TP53"

    merged.df <- mergeProbability(df)

    }

[Package SubCellBarCode version 1.6.0 Index]