dim,VCFArraySeed-method {VCFArray} | R Documentation

## VCFArraySeed or VCFArray related methods, slot getters and setters.

### Description

`dim`, `dimnames`: dimension and dimnames of object contained in the VCF file.

`vcffile`: extract the `VcfFile` object corresponding to the backend VCF file.

`rowRanges`: extract the `rowRanges` information from the backend VCF file.

### Usage

    ## S4 method for signature 'VCFArraySeed'
    dim(x)

    ## S4 method for signature 'VCFArraySeed'
    dimnames(x)

    vcffile(x)

    ## S4 method for signature 'VCFArraySeed'
    vcffile(x)

    ## S4 method for signature 'VCFArraySeed'
    rowRanges(x)

    ## S4 method for signature 'VCFArraySeed'
    show(object)

    ## S4 method for signature 'VCFArray'
    vcffile(x)

    ## S4 method for signature 'VCFArray'
    rowRanges(x)

### Arguments

`x` | the `VCFArray` or `VCFArraySeed` objects.
`object` | the `VCFArraySeed` object.

### Value

`dim`: the integer vector of dimensions for `VCFArray` or `VCFArraySeed` objects.

`dimnames`: the unnamed list of dimension names for `VCFArray` and `VCFArraySeed` objects.

`vcffile`: the `VcfFile` object corresponding to the backend VCF file.

### Examples

    fl <- system.file("extdata", "chr22.vcf.gz",
                      package="VariantAnnotation")
    va <- VCFArray(fl, name = "GT")
    dim(va)
    dimnames(va)
    vcffile(va)
    seed(va)
    dim(seed(va))
    DelayedArray::type(va)

[Package VCFArray version 1.6.0 Index]