computeNucleosomeEnrichmentOverBackground {VplotR} | R Documentation

## Internal function

### Description

A function to compute nucleosome enrichment of a Vmat

### Usage

    computeNucleosomeEnrichmentOverBackground(
      Vmat,
      background = NULL,
      plus1_nuc_only = FALSE,
      minus1_nuc = list(c(xmin = -150, xmax = -70), c(ymin = 165, ymax = 260)),
      minus1_nuc_neg = list(c(xmin = -150, xmax = -70), c(ymin = 60, ymax = 145)),
      plus1_nuc = list(c(xmin = 70, xmax = 150), c(ymin = 165, ymax = 260)),
      plus1_nuc_neg = list(c(xmin = 70, xmax = 150), c(ymin = 50, ymax = 145)),
      ...
    )

### Arguments

`Vmat` | A Vmat computed by nucleosomeEnrichment function
`background` | a background Vmat
`plus1_nuc_only` | Boolean Should compute nucleosome enrichment only for +1 nucleosome?
`minus1_nuc` | list where the -1 nucleosome is located
`minus1_nuc_neg` | where the background of the -1 nucleosome is located
`plus1_nuc` | where the +1 nucleosome is located
`plus1_nuc_neg` | where the background of the +1 nucleosome is located
`...` | additional parameters

### Value

list

[Package VplotR version 1.0.0 Index]