SnpSetSegments-class {beadarraySNP} | R Documentation

## Class "SnpSetSegments"

### Description

The SnpSetSegments class is a direct descendant of the SnpSetIllumina class, with an extra slot to define the genomic segments in each sample.

### Objects from the Class

Objects can be created by calls of the form `new("SnpSetSegments", assayData, phenoData, experimentData, annotation, protocolData, call, callProbability, G, R, cn.segments, featureData, extraData, ...)`.

### Slots

`cn.segments`:

  Object of class `"list"`

`assayData`:

  Object of class `"AssayData"` see `"SnpSetIllumina"`

`phenoData`:

  Object of class `"AnnotatedDataFrame"` see `"SnpSetIllumina"`

`featureData`:

  Object of class `"AnnotatedDataFrame"` see `"SnpSetIllumina"`

`experimentData`:

  Object of class `"MIAME"` see `"SnpSetIllumina"`

`annotation`:

  Object of class `"character"` see `"SnpSetIllumina"`

`protocolData`:

  Object of class `"AnnotatedDataFrame"` see `"SnpSetIllumina"`

`.__classVersion__`:

  Object of class `"Versions"` `"VersionedBiobase"`

### Extends

Class `"SnpSetIllumina"`, directly. Class `"eSet"`, by class "SnpSetIllumina", distance 2. Class `"VersionedBiobase"`, by class "SnpSetIllumina", distance 3. Class `"Versioned"`, by class "SnpSetIllumina", distance 4.

### Methods

cn.segments

  `signature(object = "SnpSetSegments")`: ...

cn.segments<-

  `signature(object = "SnpSetSegments", value = "list")`: ...

initialize

  `signature(.Object = "SnpSetSegments")`: ...

### Note

This class is under development, and not usable in the current form

### Author(s)

Jan Oosting

### References

Corver et.al. Can Res dec 2008

### See Also

`segmentate`

### Examples

    showClass("SnpSetSegments")

[Package beadarraySNP version 1.56.0 Index]