plotSingleGroup {cfDNAPro} | R Documentation

## Plot the raw fragment size metrics of single group in a single plot, colored by samples.

### Description

Plot the raw fragment size metrics of single group in a single plot, colored by samples.

### Usage

    plotSingleGroup(x, xlim, ylim, vline, order, plot, ...)

### Arguments

`x` | A long-format dataframe contains the metrics of different cohort.
`xlim` | The x axis range shown in the plot. Default is 'c(0,500)'.
`ylim` | The y axis range shown in the fraction of fragment size plots. Default is 'c(0,0.035)'.
`vline` | Vertical dashed lines, default value is 'c(81,167)'.
`order` | The groups show in the final plot, the input value should be vector, e.g. ‘order = c(’group1')“, default is all groups/cohorts in the folder path.
`plot` | The plot type, default is 'all' which means both proportion, cdf and 1-cdf plots will be shown.
`...` | Further arguments passed to or from other methods.

### Value

The function returns a list plots.

### Author(s)

Haichao Wang

### Examples

    # Get the path to example data.
    path <- examplePath("groups_picard")

    # Calculate the metrics.
    df <- callMetrics(path = path)

    # Plot the only the group specified..
    plot <- plotSingleGroup(x = df, order = c("cohort_1"))

[Package cfDNAPro version 1.0.0 Index]