plotAllToOne {cfDNAPro} | R Documentation

## Plot the raw fragment size metrics (e.g. proportion, cdf and 1-cdf) of all groups with different colors in a single plot

### Description

Plot the raw fragment size metrics (e.g. proportion, cdf and 1-cdf) of all groups with different colors in a single plot

### Usage

    plotAllToOne(x, order, plot, vline, xlim, ylim, ...)

### Arguments

`x` | A long-format dataframe contains the metrics of different cohort.
`order` | The groups show in the final plot, the input value should be vector, e.g. ‘groups=c(’group1','group2')', default is all folders in the folder path.
`plot` | The plot type, default is 'all' which means all of proportion, cdf and 1-cdf plots will be shown.
`vline` | Vertical dashed lines, default value is 'c(81,167)'.
`xlim` | The x axis range shown in the plot. Default is 'c(0,500)'.
`ylim` | The y axis range shown in the fraction of fragment size plots. Default is 'c(0,0.035)'.
`...` | Further arguments passed to or from other methods.

### Value

The function returns a list plots.

### Author(s)

Haichao Wang

### Examples

    # Get the path to example data.
    path <- examplePath("groups_picard")
    # Calculate the sizes.
    df <- callSize(path = path)
    # Plot all samples from multiple groups into one figure.
    plot <- plotAllToOne(df)

[Package cfDNAPro version 1.0.0 Index]