cstest {chipseq} | R Documentation

## A test ChIP-Seq dataset

### Description

A small subset of a ChIP-Seq dataset downloaded from the Short-Read Archive.

### Usage

    data(cstest)

### Format

The dataset is on object of class `GRangesList` with read alignments from three chromosomes in two lanes representing CTCF and GFP pull-down in mouse.

### Source

Short Read Archive, GEO accession number GSM288351 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM288351

### References

Chen X., Xu H., Yuan P., Fang F., Huss M., Vega V.B., Wong E., Orlov Y.L., Zhang W., Jiang J., Loh Y.H., Yeo H.C., Yeo Z.X., Narang V., Govindarajan K.R., Leong B., Shahab A.S., Ruan Y., Bourque G., Sung W.K., Clarke N.D., Wei C.L., Ng H.H. (2008), “Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells”. Cell, 133:1106-1117.

### Examples

    data(cstest)
    names(cstest)
    cstest$gfp

[Package chipseq version 1.40.0 Index]