summarizeSyntheticDataSet {compcodeR} | R Documentation

## Summarize a synthetic data set by some diagnostic plots

### Description

Summarize a synthetic data set (generated by `generateSyntheticData`) by some diagnostic plots.

### Usage

    summarizeSyntheticDataSet(data.set, output.filename)

### Arguments

`data.set` | A data set, either a `compData` object or a path to an `.rds` file where such an object is stored.
`output.filename` | The filename of the resulting html report (including the path).

### Author(s)

Charlotte Soneson

### Examples

    tmpdir <- normalizePath(tempdir(), winslash = "/")
    mydata.obj <- generateSyntheticData(dataset = "mydata", n.vars = 1000,
                                        samples.per.cond = 5, n.diffexp = 100,
                                        output.file = file.path(tmpdir, "mydata.rds"))
    if (interactive()) {
      summarizeSyntheticDataSet(data.set = file.path(tmpdir, "mydata.rds"),
                                output.filename = file.path(tmpdir, "mydata_check.html"))
    }

[Package compcodeR version 1.26.1 Index]