loadConvergenceData {methylInheritance} | R Documentation

## Load convergence information from RDS files

### Description

Load convergence information from RDS files.

### Usage

    loadConvergenceData(analysisResultsDir, permutationResultsDir,
      type = c("sites", "tiles"), inter = c("i2", "iAll"), position,
      by = 100)

### Arguments

`analysisResultsDir` | a `character` string, the path to the directory that contains the analysis results. The path can be the same as for the `permutatioNResultsDir` parameter.
`permutationResultsDir` | a `character` string, the path to the directory that contains the permutation results. The path can be the same as for the `analysisResultsDir` parameter.
`type` | One of the `"sites"` or `"tiles"` strings. Specifies the type of differentially methylated elements should be returned. For retrieving differentially methylated bases `type` = `"sites"`; for differentially methylated regions `type` = `"tiles"`. Default: `"sites"`.
`inter` | One of the `"i2"` or `"iAll"` strings. Specifies the type of intersection should be returned. For retrieving intersection results between two consecutive generations `inter` = `"i2"`; for intersection results between three generations or more `inter` = `"iAll"`. Default: `"i2"`.
`position` | a positive `integer`, the position in the `list` where the information will be extracted.
`by` | a `integer`, the increment of the number of permutations where the significant level is tested. Default: 100.

### Value

a graph showing the evolution of the significant level with the number of permutations

### Author(s)

Astrid Deschenes, Pascal Belleau

### Examples

    ## Get the name of the directory where files are stored
    filesDir <- system.file("extdata", "TEST", package="methylInheritance")

    ## Load convergence information
    results <- loadConvergenceData(analysisResultsDir = filesDir,
        permutationResultsDir = filesDir, type="sites", inter="i2", position=1,
        by=1)

[Package methylInheritance version 1.14.0 Index]