MD_hicexp {multiHiCcompare} | R Documentation

## Make MD plots for all combinations of a condition

### Description

Make MD plots for all combinations of a condition

### Usage

    MD_hicexp(hicexp, prow = 3, pcol = 3, plot.chr = NA, plot.loess = FALSE)

### Arguments

`hicexp` | A hicexp object.
`prow` | The number of rows to use for the grid of MD plots. Defaults to 3.
`pcol` | The number of columns to use for the grid of MD plots. Defaults to 3.
`plot.chr` | A specific chromosome or set of chromosome which you want to plot. This should be a numeric value, i.e. to plot chromosome 1 set plot.chr = 1, to plot chromosomes 1 and 5 set plot.chr = c(1, 5). Defaults to NA indicating that all chromosomes present in the hicexp will be plotted.
`plot.loess` | Logical, should a loess curve be plotted over the MD plots. Note setting this to TRUE will increase the computational time for plotting.

### Value

A set of MD plots.

### Examples

    data("hicexp2")
    MD_hicexp(hicexp2)

[Package multiHiCcompare version 1.8.0 Index]