# Generated by roxygen2: do not edit by hand

export(MD_composite)
export(MD_hicexp)
export(cyclic_loess)
export(exportJuicebox)
export(fastlo)
export(hic_exactTest)
export(hic_filter)
export(hic_glm)
export(hic_scale)
export(make_hicexp)
export(manhattan_hicexp)
export(perm_test)
export(plot_counts)
export(plot_pvals)
export(pval_heatmap)
export(topDirs)
exportClasses(Hicexp)
exportMethods(hic_table)
exportMethods(meta)
exportMethods(normalized)
exportMethods(resolution)
exportMethods(results)
exportMethods(show)
import(GenomeInfoDbData)
import(data.table)
import(edgeR)
import(methods)
importFrom(BLMA,addCLT)
importFrom(BiocParallel,bplapply)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,pos)
importFrom(HiCcompare,MD.plot1)
importFrom(data.table,rbindlist)
importFrom(dplyr,full_join)
importFrom(dplyr,left_join)
importFrom(dplyr,right_join)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,persp)
importFrom(graphics,points)
importFrom(graphics,smoothScatter)
importFrom(metap,sumlog)
importFrom(metap,sumz)
importFrom(pbapply,pblapply)
importFrom(pheatmap,pheatmap)
importFrom(qqman,manhattan)
importFrom(stats,D)
importFrom(stats,aggregate)
importFrom(stats,end)
importFrom(stats,loess)
importFrom(stats,loess.control)
importFrom(stats,loess.smooth)
importFrom(stats,model.matrix)
importFrom(stats,optimize)
importFrom(stats,p.adjust)
importFrom(stats,predict)
importFrom(stats,start)
importFrom(stats,update)
importFrom(utils,combn)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.table)
