loessfit1 {polyester} | R Documentation

## Empirical GC bias model, NA06985

### Description

Loess model for log counts measuring transcript expression as a function of the transcript's GC content. The model was created using sample NA06985 in the `Ballgown` obtained at http://files.figshare.com/1625419/fpkm.rda

### Format

Object of class `loess`

### Source

Constructed using the code available at https://github.com/alyssafrazee/polyester/blob/master/gc_bias.R

### References

GEUVADIS data set: 't Hoen PA, et al (2013): Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories. Nature Biotechnology 31(11): 1015-1022.

Lappalainen, et al (2013): Transcriptome and genome sequencing uncovers functional variation in humans. Nature 501: 506-511.

[Package polyester version 1.26.0 Index]