exportSCE {singleCellTK} | R Documentation

## Export data in SingleCellExperiment object

### Description

Export data in SingleCellExperiment object

### Usage

    exportSCE(
      inSCE,
      samplename = "sample",
      directory = "./",
      type = "Cells",
      format = c("SCE", "AnnData", "FlatFile", "HTAN")
    )

### Arguments

`inSCE` | A SingleCellExperiment object that contains the data. QC metrics are stored in colData of the singleCellExperiment object.
`samplename` | Sample name. This will be used as name of subdirectories and the prefix of flat file output. Default is 'sample'.
`directory` | Output directory. Default is './'.
`type` | Type of data. The type of data stored in SingleCellExperiment object. It can be 'Droplets'(raw droplets matrix) or 'Cells' (cells matrix).
`format` | The format of output. It currently supports flat files, rds files and python h5 files. It can output multiple formats. Default: c("SCE", "AnnData", "FlatFile", "HTAN").

### Value

Generates a file containing data from `inSCE`, in specified `format`.

### Examples

    data(scExample)
    ## Not run:
    exportSCE(sce, format = "SCE")

    ## End(Not run)

[Package singleCellTK version 2.0.0 Index]