.seuratInvalidate {singleCellTK} | R Documentation

## .seuratInvalidate Removes seurat data from the input SingleCellExperiment object specified by the task in the Seurat workflow.

### Description

.seuratInvalidate Removes seurat data from the input SingleCellExperiment object specified by the task in the Seurat workflow.

### Usage

    .seuratInvalidate(
      inSCE,
      scaleData = TRUE,
      varFeatures = TRUE,
      PCA = TRUE,
      ICA = TRUE,
      tSNE = TRUE,
      UMAP = TRUE,
      clusters = TRUE
    )

### Arguments

`inSCE` | Input `SingleCellExperiment` object to remove Seurat data from.
`scaleData` | Remove scaled data from seurat. Default `TRUE`.
`varFeatures` | Remove variable features from seurat. Default `TRUE`.
`PCA` | Remove PCA from seurat. Default `TRUE`.
`ICA` | Remove ICA from seurat. Default `TRUE`.
`tSNE` | Remove tSNE from seurat. Default `TRUE`.
`UMAP` | Remove UMAP from seurat. Default `TRUE`.
`clusters` | Remove clusters from seurat. Default `TRUE`.

### Value

Updated SingleCellExperiment object containing the Seurat object in the metadata slot with the data removed

[Package singleCellTK version 2.0.0 Index]