summarizeSCE {singleCellTK} | R Documentation

## Summarize an assay in a SingleCellExperiment

### Description

Creates a table of summary metrics from an input SingleCellExperiment

### Usage

    summarizeSCE(inSCE, useAssay = NULL, sampleVariableName = NULL)

### Arguments

`inSCE` | Input SingleCellExperiment object.
`useAssay` | Indicate which assay to summarize. If `NULL`, then the first assay in `inSCE` will be used. Default `NULL`.
`sampleVariableName` | Variable name in `colData` denoting which sample each cell belongs to. If `NULL`, all cells will be assumed to come from the same sample. Default `"sample"`.

### Value

A data.frame object of summary metrics.

### Examples

    data("mouseBrainSubsetSCE")
    summarizeSCE(mouseBrainSubsetSCE, sample = NULL)

[Package singleCellTK version 2.0.0 Index]