seuratRunTSNE {singleCellTK} | R Documentation

## seuratRunTSNE Computes tSNE from the given sce object and stores the tSNE computations back into the sce object

### Description

seuratRunTSNE Computes tSNE from the given sce object and stores the tSNE computations back into the sce object

### Usage

    seuratRunTSNE(
      inSCE,
      useReduction = c("pca", "ica"),
      reducedDimName = "seuratTSNE",
      dims = 10,
      perplexity = 30
    )

### Arguments

`inSCE` | (sce) object on which to compute the tSNE
`useReduction` | selected reduction algorithm to use for computing tSNE. One of "pca" or "ica". Default `"pca"`.
`reducedDimName` | Name of new reducedDims object containing Seurat tSNE Default `seuratTSNE`.
`dims` | Number of reduction components to use for tSNE computation. Default `10`.
`perplexity` | Adjust the preplexity tuneable parameter for the underlying tSNE call. Default `30`.

### Value

Updated sce object with tSNE computations stored

[Package singleCellTK version 2.0.0 Index]