seuratICA {singleCellTK} | R Documentation

## seuratICA Computes ICA on the input sce object and stores the calculated independent components within the sce object

### Description

seuratICA Computes ICA on the input sce object and stores the calculated independent components within the sce object

### Usage

    seuratICA(inSCE, useAssay, reducedDimName = "seuratICA", nics = 20)

### Arguments

`inSCE` | (sce) object on which to compute ICA
`useAssay` | Assay containing scaled counts to use in ICA.
`reducedDimName` | Name of new reducedDims object containing Seurat ICA Default `seuratICA`.
`nics` | Number of independent components to compute. Default `20`.

### Value

Updated `SingleCellExperiment` object which now contains the computed independent components

### Examples

    data(scExample, package = "singleCellTK")
    ## Not run:
    sce <- seuratNormalizeData(sce, useAssay = "counts")
    sce <- seuratFindHVG(sce, useAssay = "counts")
    sce <- seuratScaleData(sce, useAssay = "counts")
    sce <- seuratICA(sce, useAssay = "counts")

    ## End(Not run)

[Package singleCellTK version 2.0.0 Index]