seuratSCTransform {singleCellTK} | R Documentation

## seuratSCTransform Runs the SCTransform function to transform/normalize the input data

### Description

seuratSCTransform Runs the SCTransform function to transform/normalize the input data

### Usage

    seuratSCTransform(inSCE, normAssayName = "SCTCounts", useAssay = "counts")

### Arguments

`inSCE` | Input SingleCellExperiment object
`normAssayName` | Name for the output data assay. Default `"SCTCounts"`.
`useAssay` | Name for the input data assay. Default `"counts"`.

### Value

Updated SingleCellExperiment object containing the transformed data

### Examples

    data(sce_chcl, package = "scds")
    sce_chcl <- seuratSCTransform(sce_chcl, "SCTCounts", "counts")

[Package singleCellTK version 2.0.0 Index]