Package: annotation Version: 1.18.1 Depends: R (>= 3.3.0), VariantAnnotation, AnnotationHub, Organism.dplyr, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm10.ensGene, org.Hs.eg.db, org.Mm.eg.db, Homo.sapiens, BSgenome.Hsapiens.UCSC.hg19, biomaRt, BSgenome, TxDb.Athaliana.BioMart.plantsmart22 Suggests: knitr, rmarkdown, BiocStyle License: Artistic-2.0 MD5sum: c59c6179425b17a31ce99d4c08b6e829 NeedsCompilation: no Package: arrays Version: 1.20.0 Depends: R (>= 3.0.0) Suggests: affy, limma, hgfocuscdf, knitr, rmarkdown, BiocStyle License: Artistic-2.0 MD5sum: ad2f6a87de086939779286492ed9a8f6 NeedsCompilation: no Package: BiocMetaWorkflow Version: 1.16.0 Suggests: BiocStyle, knitr, rmarkdown, BiocWorkflowTools License: Artistic-2.0 MD5sum: e2037cfc74be24dbe59f01aa037f6d87 NeedsCompilation: no Package: BP4RNAseq Version: 1.4.0 Depends: R (>= 4.0.0) Imports: dplyr, fastqcr, stringr, tidyr, stats, utils, magrittr, reticulate Suggests: knitr, 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MKinfer, matrixStats, rlang, plyr, tidyr Suggests: optparse, PerformanceAnalytics, naivebayes, reshape2, TCC, org.Hs.eg.db, org.Mm.eg.db License: MIT + file LICENSE MD5sum: b4bb3ace55009b93e2c3b85f4c06522d NeedsCompilation: no Package: ExpressionNormalizationWorkflow Version: 1.20.0 Imports: Biobase (>= 2.24.0), limma (>= 3.20.9), lme4 (>= 1.1.7), matrixStats (>= 0.10.3), pvca (>= 1.4.0), snm (>= 1.12.0), sva (>= 3.10.0), vsn (>= 3.32.0) Suggests: knitr, BiocStyle License: GPL (>= 3) MD5sum: f32393de976a943705d3beba92d22290 NeedsCompilation: no Package: fluentGenomics Version: 1.6.0 Depends: R (>= 4.0) Imports: plyranges (>= 1.7.7), dplyr, SummarizedExperiment, readr, stats, utils Suggests: knitr, rmarkdown, bookdown, rappdirs, BiocFileCache, DESeq2, limma, ggplot2, tidyr, tximeta (>= 1.4.2), macrophage (>= 1.2.0), License: MIT + file LICENSE MD5sum: 0c2c96aff730e57126cefb5641af0845 NeedsCompilation: no Package: generegulation Version: 1.18.0 Depends: R (>= 3.3.0), 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