Package: scRepertoire
Title: A toolkit for single-cell immune receptor profiling
Version: 1.10.1
Authors@R: c(
    person(given = "Nick", family = "Borcherding", role = c("aut", "cre"), email = "ncborch@gmail.com"))
Description: scRepertoire was built to process data derived from the 10x Genomics Chromium Immune Profiling for both T-cell receptor (TCR) and immunoglobulin (Ig) enrichment workflows and subsequently interacts with the popular Seurat and SingleCellExperiment R packages. It also allows for general analysis of single-cell clonotype information without the use of expression information. The package functions as a wrapper for Startrac and powerTCR R packages.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
biocViews: Software, ImmunoOncology, SingleCell, Classification,
        Annotation, Sequencing
Depends: ggplot2, R (>= 4.0)
Imports: stringdist, dplyr, reshape2, ggalluvial, stringr, vegan,
        powerTCR, SingleCellExperiment, SummarizedExperiment, plyr,
        parallel, doParallel, methods, utils, rlang, igraph, ggraph,
        tidygraph, SeuratObject, stats
Suggests: knitr, rmarkdown, BiocStyle, circlize, scales, Seurat, scater
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/scRepertoire
git_branch: RELEASE_3_17
git_last_commit: 9698f1c
git_last_commit_date: 2023-07-11
Date/Publication: 2023-07-16
NeedsCompilation: no
Packaged: 2023-07-17 21:42:24 UTC; biocbuild
Author: Nick Borcherding [aut, cre]
Maintainer: Nick Borcherding <ncborch@gmail.com>
Built: R 4.3.1; ; 2023-07-20 18:55:29 UTC; unix
