SpidermiR: An R/Bioconductor package for integrative network
analysis with miRNA data
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Documentation for package ‘SpidermiR’ version 1.30.0
Help Pages
| SpidermiRanalyze_degree_centrality | Ranking degree centrality genes |
| SpidermiRanalyze_direct_net | Searching by biomarkers of interest with direct interaction |
| SpidermiRanalyze_direct_subnetwork | Searching by biomarkers of interest with direct interaction by ONLY the nodes in BI |
| SpidermiRanalyze_subnetwork_neigh | Searching by biomarkers of interest and all the edges among this bunch of nodes |
| SpidermiRdownload_drug_gene | Download drug-gene interactions in DGIdb |
| SpidermiRdownload_miRNAprediction | Download human miRNA predicted database |
| SpidermiRdownload_net | Download the network from GeneMania. |
| SpidermiRprepare_NET | Prepare matrix of gene network from Genamania with Ensembl Gene ID, and gene symbols |
| SpidermiRquery_disease | Visualize disease categories |
| SpidermiRquery_networks_type | Network categories |
| SpidermiRquery_species | Searching by network species |
| SpidermiRquery_spec_networks | Searching by network categories |