| gespeR-package | Package: Gene-Specific Phenotype EstimatoR |
| annotate.gsp | annotate.gsp |
| annotate.gsp-method | annotate.gsp |
| as.data.frame-method | Convert Phenotypes object to a data.frame |
| as.data.frame.concordance | Coerce method |
| c-method | Concatenate Phenotypes objects |
| concordance | Evaluate the concordance between Phenotype objects |
| dim-method | Dimension of a 'Phenotypes' object |
| gespeR | gespeR |
| gespeR-class | gespeR |
| gespeR-method | gespeR |
| gespeRpkg | Package: Gene-Specific Phenotype EstimatoR |
| gsp | Retrieve GSPs and SSPs from 'gespeR' objects |
| gsp-method | Retrieve GSPs and SSPs from 'gespeR' objects |
| join | join |
| join-method | join |
| lasso.rand | Randomized Lasso |
| loadValues | Methods for values of 'TargetRelations' objects |
| loadValues-method | Methods for values of 'TargetRelations' objects |
| na.rem | Remove NA/Inf values from phenotype vectors |
| na.rem-method | Remove NA/Inf values from phenotype vectors |
| path<- | path |
| path<--method | path |
| Phenotypes | Phenotypes |
| Phenotypes-class | Phenotypes |
| Phenotypes-method | Phenotypes |
| plot.concordance | Plot concordance |
| plot.gespeR | Plot method for 'gespeR' objects |
| plot.Phenotypes | Plot method for Phenotype objects |
| rbo | Rank biased overlap (Webber et al., 2010) |
| scores | scores |
| scores-method | scores |
| simData | Example data: Simulated phenotypes and target relations for 4 screens (A, B, C, D) |
| ssp | Retrieve GSPs and SSPs from 'gespeR' objects |
| ssp-method | Retrieve GSPs and SSPs from 'gespeR' objects |
| stability | stability |
| stability-method | stability |
| stability.selection | Stability Selection |
| stabilityfits | Example fits for phenotypes from simulated screening data A, B, C and D |
| target.relations | target.relations |
| target.relations-method | target.relations |
| TargetRelations | TargetRelations |
| TargetRelations-class | TargetRelations |
| TargetRelations-method | TargetRelations |
| unloadValues | Methods for values of 'TargetRelations' objects |
| unloadValues-method | Methods for values of 'TargetRelations' objects |
| values | values |
| values-method | values |
| writeValues | Methods for values of 'TargetRelations' objects |
| writeValues-method | Methods for values of 'TargetRelations' objects |
| [-method | Subsetting for Phenotype objects. |
| [-method | Subsetting for TargetRelations objects. |