| alluvialMat | alluvialMat |
| AP.RNAseq6l3c3t | CoGAPS patterns and genes weights for p.RNAseq6l3c3t |
| aucMat | aucMat |
| cluster2pattern | Generic cluster2pattern function |
| cluster2pattern-method | Generic cluster2pattern function |
| clusterPlotR | Generic clusterPlotR function |
| clusterPlotR-method | Generic clusterPlotR function |
| correlateR | correlateR |
| correlateR-class | correlateR |
| geneMatchR | Generic geneMatchR function |
| initialize-method | Constructor for correlateR |
| initialize-method | Constructor for rotatoR |
| intersectoR | Generic intersectoR function |
| intersectoR-method | Generic intersectoR function |
| map.ESepiGen4c1l | RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells |
| map.RNAseq6l3c3t | RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points |
| p.ESepiGen4c1l | RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells |
| p.RNAseq6l3c3t | RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points |
| pd.ESepiGen4c1l | RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells |
| pd.RNAseq6l3c3t | RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points |
| projectR | Generic projectR function |
| projectR-method | Generic projectR function |
| rotatoR | rotatoR |
| rotatoR-class | rotatoR |