@article{Kulakovskiy2018,
author = {Kulakovskiy, Ivan V and Vorontsov, Ilya E and Yevshin, Ivan S and Sharipov, Ruslan N and Fedorova, Alla D and Rumynskiy, Eugene I and Medvedeva, Yulia A and Magana-Mora, Arturo and Bajic, Vladimir B and Papatsenko, Dmitry A and Kolpakov, Fedor A and Makeev, Vsevolod J},
doi = {10.1093/nar/gkx1106},
issn = {0305-1048},
journal = {Nucleic Acids Research},
number = {D1},
pages = {D252--D259},
title = {{HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis}},
url = {https://doi.org/10.1093/nar/gkx1106},
volume = {46},
year = {2018}
}

@article{pmid19247990,
   Author="Fullwood, M. J.  and Ruan, Y. ",
   Title="{{C}h{I}{P}-based methods for the identification of long-range chromatin interactions}",
   Journal="J. Cell. Biochem.",
   Year="2009",
   Volume="107",
   Number="1",
   Pages="30--39",
   Month="May"
}

@article{pmid27643841,
   Author="Mumbach, M. R.  and Rubin, A. J.  and Flynn, R. A.  and Dai, C.  and Khavari, P. A.  and Greenleaf, W. J.  and Chang, H. Y. ",
   Title="{{H}i{C}h{I}{P}: efficient and sensitive analysis of protein-directed genome architecture}",
   Journal="Nat. Methods",
   Year="2016",
   Volume="13",
   Number="11",
   Pages="919--922",
   Month="Nov"
}

@Article{pmid19815776,
   Author="Lieberman-Aiden, E.  and van Berkum, N. L.  and Williams, L.  and Imakaev, M.  and Ragoczy, T.  and Telling, A.  and Amit, I.  and Lajoie, B. R.  and Sabo, P. J.  and Dorschner, M. O.  and Sandstrom, R.  and Bernstein, B.  and Bender, M. A.  and Groudine, M.  and Gnirke, A.  and Stamatoyannopoulos, J.  and Mirny, L. A.  and Lander, E. S.  and Dekker, J. ",
   Title="{{C}omprehensive mapping of long-range interactions reveals folding principles of the human genome}",
   Journal="Science",
   Year="2009",
   Volume="326",
   Number="5950",
   Pages="289--293",
   Month="Oct"
}

@article{Weintraub2017,
author = {Weintraub, Abraham S and Li, Charles H and Zamudio, Alicia V and Sigova, Alla A and Hannett, Nancy M and Day, Daniel S and Abraham, Brian J and Cohen, Malkiel A and Nabet, Behnam and Buckley, Dennis L},
issn = {0092-8674},
journal = {Cell},
number = {7},
pages = {1573--1588},
publisher = {Elsevier},
title = {{YY1 is a structural regulator of enhancer-promoter loops}},
volume = {171},
year = {2017}
}
