Package: CircSeqAlignTk
Type: Package
Title: A toolkit for end-to-end analysis of RNA-seq data for circular
        genomes
Version: 1.4.0
Authors@R: 
    c(person("Jianqiang", "Sun", , "sun@biunit.dev", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-3438-3199")),
      person("Xi", "Fu", , role = c("aut")),
      person("Wei", "Cao", role = c("aut")))
Description: 
    CircSeqAlignTk is designed for end-to-end RNA-Seq data analysis
    of circular genome sequences, from alignment to visualization.
    It mainly targets viroids which are composed of 246-401 nt circular RNAs.
    In addition, CircSeqAlignTk implements a tidy interface
    to generate synthetic sequencing data that mimic real RNA-Seq data,
    allowing developers to evaluate the performance of alignment tools
    and workflows.
Depends: R (>= 4.2)
Imports: stats, tools, utils, methods, S4Vectors, rlang, magrittr,
        dplyr, tidyr, ggplot2, BiocGenerics, Biostrings, IRanges,
        ShortRead, Rsamtools, Rbowtie2, Rhisat2
Suggests: knitr, rmarkdown, testthat, R.utils, BiocStyle
VignetteBuilder: knitr
biocViews: Sequencing, SmallRNA, Alignment, Software
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.1
URL: https://github.com/jsun/CircSeqAlignTk
BugReports: https://github.com/jsun/CircSeqAlignTk/issues
git_url: https://git.bioconductor.org/packages/CircSeqAlignTk
git_branch: RELEASE_3_18
git_last_commit: 958204b
git_last_commit_date: 2023-10-24
Date/Publication: 2023-10-26
NeedsCompilation: no
Packaged: 2023-10-27 00:37:52 UTC; biocbuild
Author: Jianqiang Sun [aut, cre] (<https://orcid.org/0000-0002-3438-3199>),
  Xi Fu [aut],
  Wei Cao [aut]
Maintainer: Jianqiang Sun <sun@biunit.dev>
Built: R 4.3.1; ; 2023-10-28 17:36:37 UTC; unix
