Package: karyoploteR
Type: Package
Title: Plot customizable linear genomes displaying arbitrary data
Version: 1.28.0
Date: 2017-05-03
Author: Bernat Gel <bgel@igtp.cat>
Maintainer: Bernat Gel <bgel@igtp.cat>
Description: karyoploteR creates karyotype plots of arbitrary genomes and offers
    a complete set of functions to plot arbitrary data on them. It mimicks many
    R base graphics functions coupling them with a coordinate change function 
    automatically mapping the chromosome and data coordinates into the plot 
    coordinates. In addition to the provided data plotting functions, it is 
    easy to add new ones.
License: Artistic-2.0
Depends: R (>= 3.4), regioneR, GenomicRanges, methods
Imports: regioneR, GenomicRanges, IRanges, Rsamtools, stats, graphics,
        memoise, rtracklayer, GenomeInfoDb, S4Vectors, biovizBase,
        digest, bezier, GenomicFeatures, bamsignals, AnnotationDbi,
        grDevices, VariantAnnotation
Suggests: BiocStyle, knitr, rmarkdown, markdown, testthat, magrittr,
        BSgenome.Hsapiens.UCSC.hg19,
        BSgenome.Hsapiens.UCSC.hg19.masked,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        TxDb.Mmusculus.UCSC.mm10.knownGene, org.Hs.eg.db, org.Mm.eg.db,
        pasillaBamSubset
URL: https://github.com/bernatgel/karyoploteR
BugReports: https://github.com/bernatgel/karyoploteR/issues
VignetteBuilder: knitr
biocViews: Visualization, CopyNumberVariation, Sequencing, Coverage,
        DNASeq, ChIPSeq, MethylSeq, DataImport, OneChannel
NeedsCompilation: no
Encoding: UTF-8
RoxygenNote: 7.2.3
git_url: https://git.bioconductor.org/packages/karyoploteR
git_branch: RELEASE_3_18
git_last_commit: 20fa00f
git_last_commit_date: 2023-10-24
Date/Publication: 2023-10-26
Packaged: 2023-10-27 05:48:32 UTC; biocbuild
Built: R 4.3.1; ; 2023-10-28 18:35:01 UTC; unix
