.get_cache	dot-get_cache
allowedSims	allowedSims
avgNormDiff	avgNormDiff
buildPredictor	buildPredictor
buildPredictor_sparseGenetic	buildPredictor_sparseGenetic
callFeatSel	callFeatSel
callOverallSelectedFeatures	callOverallSelectedFeatures
checkMakeNetFuncSims	checkMakeNetFuncSims
checkSimValid	checkSimValid
cleanPathwayName	cleanPathwayName
cnv_GR	cnv_GR
cnv_netPass	cnv_netScores
cnv_netScores	cnv_netPass
cnv_patientNetCount	cnv_patientNetCount
cnv_pheno	cnv_pheno
cnv_TTstatus	cnv_TTstatus
compareShortestPath	compareShortestPath
compileFeatures	compileFeatures
compileFeatureScores	compileFeatureScores
confmat	confmat
confusionMatrix	confusionMatrix
convertProfileToNetworks	convertProfileToNetworks
convertToMAE	convertToMAE
countIntType	countIntType
countIntType_batch	countIntType_batch
countPatientsInNet	countPatientsInNet
createNetFuncFromSimList	createNetFuncFromSimList
createPSN_MultiData	createPSN_MultiData
dataList2List	dataList2List
enrichLabelNets	enrichLabelNets
featScores	featScores
fetchPathwayDefinitions	fetchPathwayDefinitions
genes	genes
getCorrType	getCorrType
getEMapInput	getEMapInput
getEMapInput_many	getEMapInput_many
getEnr	getEnr
getFeatureScores	getFeatureScores
getFileSep	getFileSep
getGMjar_path	getGMjar_path
getNetConsensus	getNetConsensus
getOR	getOR
getPatientPredictions	getPatientPredictions
getPatientRankings	getPatientRankings
getPerformance	getPerformance
getPSN	getPSN
getRegionOL	getRegionOL
getResults	getResults
getSimilarity	getSimilarity
makeInputForEnrichmentMap	makeInputForEnrichmentMap
makePSN_NamedMatrix	makePSN_NamedMatrix
makePSN_RangeSets	makePSN_RangeSets
makeQueries	makeQueries
makeSymmetric	makeSymmetric
mapNamedRangesToSets	mapNamedRangesToSets
matrix_getIJ	matrix_getIJ
MB.pheno	MB.pheno
modelres	modelres
moveInteractionNets	moveInteractionNets
normDiff	normDiff
npheno	npheno
pathwayList	pathwayList
pathway_GR	pathway_GR
perfCalc	perfCalc
pheno	pheno
pheno_full	pheno_full
plotEmap	plotEmap
plotIntegratedPatientNetwork	plotIntegratedPatientNetwork
plotPerf	plotPerf
plotPerf_multi	plotPerf_multi
predict	predict
predictPatientLabels	predictPatientLabels
predRes	predRes
pruneNet	pruneNet
pruneNets	pruneNets
pruneNet_pctX	pruneNet_pctX
psn__builtIn	psn__builtIn
psn__corr	psn__corr
psn__custom	psn__custom
randAlphanumString	randAlphanumString
readPathways	readPathways
replacePattern	replacePattern
RR_featureTally	RR_featureTally
runFeatureSelection	runFeatureSelection
runQuery	runQuery
setupFeatureDB	setupFeatureDB
silh	silh
sim.eucscale	sim.eucscale
sim.pearscale	sim.pearscale
simpleCap	simpleCap
smoothMutations_LabelProp	smoothMutations_LabelProp
sparsify2	sparsify2
sparsify3	sparsify3
splitTestTrain	splitTestTrain
splitTestTrain_resampling	splitTestTrain_resampling
subsampleValidationData	subsampleValidationData
thresholdSmoothedMutations	thresholdSmoothedMutations
toymodel	toymodel
tSNEPlotter	tSNEPlotter
updateNets	updateNets
writeNetsSIF	writeNetsSIF
writeQueryBatchFile	writeQueryBatchFile
writeQueryFile	writeQueryFile
writeWeightedNets	writeWeightedNets
xpr	xpr
