Package: QFeatures
Title: Quantitative features for mass spectrometry data
Version: 1.12.0
Authors@R: c(person("Laurent", "Gatto",
                    email = "laurent.gatto@uclouvain.be",
                    comment = c(ORCID = "0000-0002-1520-2268"),
                    role = c("aut", "cre")),
             person("Christophe", "Vanderaa",
                    email = "christophe.vanderaa@uclouvain.be",
                    comment = c(ORCID = "0000-0001-7443-5427"),
                    role = "aut"))
Description: The QFeatures infrastructure enables the management and
   processing of quantitative features for high-throughput mass
   spectrometry assays. It provides a familiar Bioconductor user
   experience to manages quantitative data across different assay
   levels (such as peptide spectrum matches, peptides and proteins) in
   a coherent and tractable format.
Depends: R (>= 4.0), MultiAssayExperiment
Imports: methods, stats, utils, S4Vectors, IRanges,
        SummarizedExperiment, BiocGenerics, ProtGenerics (>= 1.27.1),
        AnnotationFilter, lazyeval, Biobase, MsCoreUtils (>= 1.7.2),
        igraph, plotly
Suggests: SingleCellExperiment, Matrix, HDF5Array, msdata, ggplot2,
        gplots, dplyr, limma, DT, shiny, shinydashboard, testthat,
        knitr, BiocStyle, rmarkdown, vsn, preprocessCore, matrixStats,
        imputeLCMD, pcaMethods, impute, norm, ComplexHeatmap
biocViews: Infrastructure, MassSpectrometry, Proteomics, Metabolomics
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
BugReports: https://github.com/RforMassSpectrometry/QFeatures/issues
URL: https://github.com/RforMassSpectrometry/QFeatures
Collate: 'AllGenerics.R' 'AssayLinks.R' 'QFeatures-class.R'
        'QFeatures-constructors.R' 'QFeatures-functions.R'
        'QFeatures-processing.R' 'QFeatures-filter.R'
        'QFeatures-missing-data.R' 'QFeatures-aggregation.R'
        'QFeatures-imputation.R' 'QFeatures-join.R'
        'QFeatures-validity.R' 'SummarizedExperiment-methods.R'
        'subsetBy-methods.R' 'data.R' 'reduce.R' 'utils.R' 'display.R'
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.2.3
git_url: https://git.bioconductor.org/packages/QFeatures
git_branch: RELEASE_3_18
git_last_commit: fc44d63
git_last_commit_date: 2023-10-24
Date/Publication: 2023-10-25
NeedsCompilation: no
Packaged: 2023-10-25 22:12:34 UTC; biocbuild
Author: Laurent Gatto [aut, cre] (<https://orcid.org/0000-0002-1520-2268>),
  Christophe Vanderaa [aut] (<https://orcid.org/0000-0001-7443-5427>)
Maintainer: Laurent Gatto <laurent.gatto@uclouvain.be>
