# A unified framework for working transparently with on-disk and in-memory array-like datasets

## Documentation for package ‘DelayedArray’ version 0.30.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

A B C D E G I L M N O P Q R S T U V W misc

## -- A --

acbind-method | Common operations on DelayedArray objects
all-method | Operate natively on SparseArraySeed objects
any-method | Operate natively on SparseArraySeed objects
anyNA-method | Common operations on DelayedArray objects
anyNA-method | Operate natively on SparseArraySeed objects
aperm-method | DelayedArray objects
aperm-method | SparseArraySeed objects
aperm.DelayedArray | DelayedArray objects
aperm.SparseArraySeed | SparseArraySeed objects
apply | Common operations on DelayedArray objects
apply-method | Common operations on DelayedArray objects
arbind-method | Common operations on DelayedArray objects
arrayRealizationSink-class | RealizationSink objects
as.array-method | SparseArraySeed objects
as.array.SparseArraySeed | SparseArraySeed objects
as.matrix-method | SparseArraySeed objects
as.matrix.SparseArraySeed | SparseArraySeed objects
AutoBlock-global-settings | Control the geometry of automatic blocks
AutoGrid | Create automatic grids to use for block processing of array-like objects
AutoRealizationSink | RealizationSink objects

## -- B --

bindROWS-method | Common operations on DelayedArray objects
block processing | blockApply() and family
blockApply | blockApply() and family
blockGrid | Create automatic grids to use for block processing of array-like objects
blockReduce | blockApply() and family
block_processing | blockApply() and family
BLOCK_write_to_sink | Realize an object in memory or on disk

## -- C --

c-method | DelayedArray objects
capped_volume_boxes | Utilities to make capped volume boxes
cbind | Common operations on DelayedArray objects
cbind-method | Common operations on DelayedArray objects
cbind-method | Operate natively on SparseArraySeed objects
ChunkedRleArraySeed | RleArraySeed objects
ChunkedRleArraySeed-class | RleArraySeed objects
class:arrayRealizationSink | RealizationSink objects
class:ChunkedRleArraySeed | RleArraySeed objects
class:ConstantArray | A DelayedArray subclass that contains a constant value
class:ConstantArraySeed | A DelayedArray subclass that contains a constant value
class:ConstantMatrix | A DelayedArray subclass that contains a constant value
class:DelayedAbind | DelayedAbind objects
class:DelayedAperm | DelayedAperm objects
class:DelayedArray | DelayedArray objects
class:DelayedArray1 | DelayedArray objects
class:DelayedMatrix | DelayedArray objects
class:DelayedNaryIsoOp | DelayedNaryIsoOp objects
class:DelayedNaryOp | DelayedOp objects
class:DelayedOp | DelayedOp objects
class:DelayedSetDimnames | DelayedSetDimnames objects
class:DelayedSubassign | DelayedSubassign objects
class:DelayedSubset | DelayedSubset objects
class:DelayedUnaryIsoOp | DelayedOp objects
class:DelayedUnaryIsoOpStack | DelayedUnaryIsoOpStack objects
class:DelayedUnaryIsoOpWithArgs | DelayedUnaryIsoOpWithArgs objects
class:DelayedUnaryOp | DelayedOp objects
class:RealizationSink | RealizationSink objects
class:RleArray | RleArray objects
class:RleArraySeed | RleArraySeed objects
class:RleMatrix | RleArray objects
class:RleRealizationSink | RleArraySeed objects
class:SolidRleArraySeed | RleArraySeed objects
class:SparseArraySeed | SparseArraySeed objects
close-method | RealizationSink objects
coerce-method | A DelayedArray subclass that contains a constant value
coerce-method | DelayedArray objects
coerce-method | RealizationSink objects
coerce-method | RleArray objects
coerce-method | RleArraySeed objects
coerce-method | SparseArraySeed objects
colAutoGrid | Create automatic grids to use for block processing of array-like objects
colGrid | Create automatic grids to use for block processing of array-like objects
colMaxs | DelayedMatrix row/col summarization
colMaxs-method | DelayedMatrix row/col summarization
colMeans | DelayedMatrix row/col summarization
colMeans-method | DelayedMatrix row/col summarization
colMins | DelayedMatrix row/col summarization
colMins-method | DelayedMatrix row/col summarization
colRanges | DelayedMatrix row/col summarization
colRanges-method | DelayedMatrix row/col summarization
colsum | rowsum() and colsum() on a DelayedMatrix object
colsum-method | rowsum() and colsum() on a DelayedMatrix object
colSums | DelayedMatrix row/col summarization
colSums-method | DelayedMatrix row/col summarization
colVars | DelayedMatrix row/col summarization
colVars-method | DelayedMatrix row/col summarization
ConstantArray | A DelayedArray subclass that contains a constant value
ConstantArray-class | A DelayedArray subclass that contains a constant value
ConstantArraySeed | A DelayedArray subclass that contains a constant value
ConstantArraySeed-class | A DelayedArray subclass that contains a constant value
ConstantMatrix | A DelayedArray subclass that contains a constant value
ConstantMatrix-class | A DelayedArray subclass that contains a constant value
contentIsPristine | Simplify a tree of delayed operations
crossprod | DelayedMatrix multiplication and cross-product
crossprod-method | DelayedMatrix multiplication and cross-product
currentBlockId | blockApply() and family
currentViewport | blockApply() and family

## -- D --

dbinom | Statistical functions on DelayedArray objects
dbinom-method | Statistical functions on DelayedArray objects
defaultAutoGrid | Create automatic grids to use for block processing of array-like objects
defaultSinkAutoGrid | Create automatic grids to use for block processing of array-like objects
DelayedAbind | DelayedAbind objects
DelayedAbind-class | DelayedAbind objects
DelayedAperm | DelayedAperm objects
DelayedAperm-class | DelayedAperm objects
DelayedArray | DelayedArray objects
DelayedArray-class | DelayedArray objects
DelayedArray-method | A DelayedArray subclass that contains a constant value
DelayedArray-method | DelayedArray objects
DelayedArray-method | RleArray objects
DelayedArray-stats | Statistical functions on DelayedArray objects
DelayedArray-utils | Common operations on DelayedArray objects
DelayedArray1 | DelayedArray objects
DelayedArray1-class | DelayedArray objects
DelayedMatrix | DelayedArray objects
DelayedMatrix-class | DelayedArray objects
DelayedMatrix-mult | DelayedMatrix multiplication and cross-product
DelayedMatrix-rowsum | rowsum() and colsum() on a DelayedMatrix object
DelayedMatrix-stats | DelayedMatrix row/col summarization
DelayedNaryIsoOp | DelayedNaryIsoOp objects
DelayedNaryIsoOp-class | DelayedNaryIsoOp objects
DelayedNaryOp | DelayedOp objects
DelayedNaryOp-class | DelayedOp objects
DelayedOp | DelayedOp objects
DelayedOp-class | DelayedOp objects
DelayedSetDimnames | DelayedSetDimnames objects
DelayedSetDimnames-class | DelayedSetDimnames objects
DelayedSubassign | DelayedSubassign objects
DelayedSubassign-class | DelayedSubassign objects
DelayedSubset | DelayedSubset objects
DelayedSubset-class | DelayedSubset objects
DelayedUnaryIsoOp | DelayedOp objects
DelayedUnaryIsoOp-class | DelayedOp objects
DelayedUnaryIsoOpStack | DelayedUnaryIsoOpStack objects
DelayedUnaryIsoOpStack-class | DelayedUnaryIsoOpStack objects
DelayedUnaryIsoOpWithArgs | DelayedUnaryIsoOpWithArgs objects
DelayedUnaryIsoOpWithArgs-class | DelayedUnaryIsoOpWithArgs objects
DelayedUnaryOp | DelayedOp objects
DelayedUnaryOp-class | DelayedOp objects
dense2sparse | SparseArraySeed objects
dim-method | DelayedAbind objects
dim-method | DelayedAperm objects
dim-method | DelayedArray objects
dim-method | DelayedNaryIsoOp objects
dim-method | DelayedOp objects
dim-method | DelayedSubset objects
dim-method | RealizationSink objects
dim-method | RleArraySeed objects
dim<--method | DelayedArray objects
dimnames-method | DelayedAbind objects
dimnames-method | DelayedAperm objects
dimnames-method | DelayedArray objects
dimnames-method | DelayedNaryIsoOp objects
dimnames-method | DelayedOp objects
dimnames-method | DelayedSetDimnames objects
dimnames-method | DelayedSubset objects
dimnames-method | RleArraySeed objects
dimnames-method | SparseArraySeed objects
dimnames<--method | DelayedArray objects
dimnames<--method | SparseArraySeed objects
dlogis | Statistical functions on DelayedArray objects
dlogis-method | Statistical functions on DelayedArray objects
dnorm | Statistical functions on DelayedArray objects
dnorm-method | Statistical functions on DelayedArray objects
dpois | Statistical functions on DelayedArray objects
dpois-method | Statistical functions on DelayedArray objects
drop-method | DelayedArray objects

## -- E --

effectiveGrid | blockApply() and family
extract_array-method | A DelayedArray subclass that contains a constant value
extract_array-method | DelayedAbind objects
extract_array-method | DelayedAperm objects
extract_array-method | DelayedArray objects
extract_array-method | DelayedNaryIsoOp objects
extract_array-method | DelayedOp objects
extract_array-method | DelayedSubassign objects
extract_array-method | DelayedSubset objects
extract_array-method | DelayedUnaryIsoOpStack objects
extract_array-method | DelayedUnaryIsoOpWithArgs objects
extract_array-method | RleArraySeed objects
extract_array-method | SparseArraySeed objects

## -- G --

getAutoBlockLength | Control the geometry of automatic blocks
getAutoBlockShape | Control the geometry of automatic blocks
getAutoBlockSize | Control the geometry of automatic blocks
getAutoBPPARAM | blockApply() and family
getAutoGridMaker | Create automatic grids to use for block processing of array-like objects
getAutoRealizationBackend | RealizationSink objects
getRealizationBackend | RealizationSink objects
get_type_size | Control the geometry of automatic blocks
grepl-method | Common operations on DelayedArray objects
gridApply | blockApply() and family
gridReduce | blockApply() and family
gsub-method | Common operations on DelayedArray objects

## -- I --

is.finite-method | Common operations on DelayedArray objects
is.infinite-method | Common operations on DelayedArray objects
is.infinite-method | Operate natively on SparseArraySeed objects
is.na-method | Common operations on DelayedArray objects
is.na-method | Operate natively on SparseArraySeed objects
is.nan-method | Common operations on DelayedArray objects
is.nan-method | Operate natively on SparseArraySeed objects
isLinear | Utilities to make capped volume boxes
isLinear-method | Utilities to make capped volume boxes
isPristine | Simplify a tree of delayed operations
is_noop | DelayedOp objects
is_noop-method | DelayedAbind objects
is_noop-method | DelayedAperm objects
is_noop-method | DelayedSetDimnames objects
is_noop-method | DelayedSubassign objects
is_noop-method | DelayedSubset objects
is_sparse-method | A DelayedArray subclass that contains a constant value
is_sparse-method | DelayedAbind objects
is_sparse-method | DelayedAperm objects
is_sparse-method | DelayedNaryIsoOp objects
is_sparse-method | DelayedOp objects
is_sparse-method | DelayedSubassign objects
is_sparse-method | DelayedSubset objects
is_sparse-method | DelayedUnaryIsoOpStack objects
is_sparse-method | DelayedUnaryIsoOpWithArgs objects
is_sparse-method | SparseArraySeed objects

## -- L --

lengths-method | Common operations on DelayedArray objects
log-method | Common operations on DelayedArray objects

## -- M --

makeCappedVolumeBox | Utilities to make capped volume boxes
makeRegularArrayGridOfCappedLengthViewports | Utilities to make capped volume boxes
matrixClass | DelayedArray objects
matrixClass-method | A DelayedArray subclass that contains a constant value
matrixClass-method | DelayedArray objects
matrixClass-method | RleArray objects
max-method | Operate natively on SparseArraySeed objects
mean | Common operations on DelayedArray objects
mean-method | Common operations on DelayedArray objects
mean-method | Operate natively on SparseArraySeed objects
mean.DelayedArray | Common operations on DelayedArray objects
mean.SparseArraySeed | Operate natively on SparseArraySeed objects
min-method | Operate natively on SparseArraySeed objects
modify_seeds | Visualize and access the leaves of a tree of delayed operations

## -- N --

names-method | DelayedArray objects
names<--method | DelayedArray objects
nchar-method | Common operations on DelayedArray objects
nchar-method | Operate natively on SparseArraySeed objects
netSubsetAndAperm | Simplify a tree of delayed operations
netSubsetAndAperm-method | Simplify a tree of delayed operations
new_DelayedArray | DelayedArray objects
nseed | Visualize and access the leaves of a tree of delayed operations
nseed-method | Visualize and access the leaves of a tree of delayed operations
nzdata | SparseArraySeed objects
nzdata-method | SparseArraySeed objects
nzindex | SparseArraySeed objects
nzindex-method | SparseArraySeed objects

## -- O --

OLD_extract_sparse_array | SparseArraySeed objects
OLD_extract_sparse_array-method | A DelayedArray subclass that contains a constant value
OLD_extract_sparse_array-method | DelayedAbind objects
OLD_extract_sparse_array-method | DelayedAperm objects
OLD_extract_sparse_array-method | DelayedNaryIsoOp objects
OLD_extract_sparse_array-method | DelayedOp objects
OLD_extract_sparse_array-method | DelayedSubassign objects
OLD_extract_sparse_array-method | DelayedSubset objects
OLD_extract_sparse_array-method | DelayedUnaryIsoOpStack objects
OLD_extract_sparse_array-method | DelayedUnaryIsoOpWithArgs objects
OLD_extract_sparse_array-method | SparseArraySeed objects

## -- P --

path | Visualize and access the leaves of a tree of delayed operations
path-method | Visualize and access the leaves of a tree of delayed operations
path<--method | Visualize and access the leaves of a tree of delayed operations
pbinom | Statistical functions on DelayedArray objects
pbinom-method | Statistical functions on DelayedArray objects
plogis | Statistical functions on DelayedArray objects
plogis-method | Statistical functions on DelayedArray objects
pmax2 | Common operations on DelayedArray objects
pmax2-method | Common operations on DelayedArray objects
pmin2 | Common operations on DelayedArray objects
pmin2-method | Common operations on DelayedArray objects
pnorm | Statistical functions on DelayedArray objects
pnorm-method | Statistical functions on DelayedArray objects
ppois | Statistical functions on DelayedArray objects
ppois-method | Statistical functions on DelayedArray objects
prod-method | Operate natively on SparseArraySeed objects

## -- Q --

qbinom | Statistical functions on DelayedArray objects
qbinom-method | Statistical functions on DelayedArray objects
qlogis | Statistical functions on DelayedArray objects
qlogis-method | Statistical functions on DelayedArray objects
qnorm | Statistical functions on DelayedArray objects
qnorm-method | Statistical functions on DelayedArray objects
qpois | Statistical functions on DelayedArray objects
qpois-method | Statistical functions on DelayedArray objects

## -- R --

range | Common operations on DelayedArray objects
range-method | Common operations on DelayedArray objects
range-method | Operate natively on SparseArraySeed objects
range.DelayedArray | Common operations on DelayedArray objects
range.SparseArraySeed | Operate natively on SparseArraySeed objects
rbind | Common operations on DelayedArray objects
rbind-method | Common operations on DelayedArray objects
rbind-method | Operate natively on SparseArraySeed objects
RealizationSink | RealizationSink objects
RealizationSink-class | RealizationSink objects
realize | Realize an object in memory or on disk
realize-method | Realize an object in memory or on disk
registeredRealizationBackends | RealizationSink objects
RleArray | RleArray objects
RleArray-class | RleArray objects
RleArraySeed | RleArraySeed objects
RleArraySeed-class | RleArraySeed objects
RleMatrix | RleArray objects
RleMatrix-class | RleArray objects
RleRealizationSink | RleArraySeed objects
RleRealizationSink-class | RleArraySeed objects
round-method | Common operations on DelayedArray objects
rowAutoGrid | Create automatic grids to use for block processing of array-like objects
rowGrid | Create automatic grids to use for block processing of array-like objects
rowMaxs | DelayedMatrix row/col summarization
rowMaxs-method | DelayedMatrix row/col summarization
rowMeans | DelayedMatrix row/col summarization
rowMeans-method | DelayedMatrix row/col summarization
rowMins | DelayedMatrix row/col summarization
rowMins-method | DelayedMatrix row/col summarization
rowRanges | DelayedMatrix row/col summarization
rowRanges-method | DelayedMatrix row/col summarization
rowsum | rowsum() and colsum() on a DelayedMatrix object
rowsum-method | rowsum() and colsum() on a DelayedMatrix object
rowsum.DelayedMatrix | rowsum() and colsum() on a DelayedMatrix object
rowSums | DelayedMatrix row/col summarization
rowSums-method | DelayedMatrix row/col summarization
rowVars | DelayedMatrix row/col summarization
rowVars-method | DelayedMatrix row/col summarization

## -- S --

scale | Common operations on DelayedArray objects
scale-method | Common operations on DelayedArray objects
scale.DelayedMatrix | Common operations on DelayedArray objects
seed | Visualize and access the leaves of a tree of delayed operations
seed-method | Visualize and access the leaves of a tree of delayed operations
seed<- | Visualize and access the leaves of a tree of delayed operations
seed<--method | Visualize and access the leaves of a tree of delayed operations
seedApply | Visualize and access the leaves of a tree of delayed operations
setAutoBlockShape | Control the geometry of automatic blocks
setAutoBlockSize | Control the geometry of automatic blocks
setAutoBPPARAM | blockApply() and family
setAutoGridMaker | Create automatic grids to use for block processing of array-like objects
setAutoRealizationBackend | RealizationSink objects
setRealizationBackend | RealizationSink objects
set_grid_context | blockApply() and family
show-method | DelayedArray objects
show-method | Visualize and access the leaves of a tree of delayed operations
showtree | Visualize and access the leaves of a tree of delayed operations
signif-method | Common operations on DelayedArray objects
simplify | Simplify a tree of delayed operations
simplify-method | Simplify a tree of delayed operations
sinkApply | RealizationSink objects
SolidRleArraySeed | RleArraySeed objects
SolidRleArraySeed-class | RleArraySeed objects
sparse2dense | SparseArraySeed objects
SparseArraySeed | SparseArraySeed objects
SparseArraySeed-class | SparseArraySeed objects
SparseArraySeed-utils | Operate natively on SparseArraySeed objects
sparsity | SparseArraySeed objects
sparsity-method | SparseArraySeed objects
split-method | DelayedArray objects
split.DelayedArray | DelayedArray objects
splitAsList-method | DelayedArray objects
sub-method | Common operations on DelayedArray objects
sum-method | Operate natively on SparseArraySeed objects
summary-method | DelayedAbind objects
summary-method | DelayedAperm objects
summary-method | DelayedNaryIsoOp objects
summary-method | DelayedOp objects
summary-method | DelayedSetDimnames objects
summary-method | DelayedSubassign objects
summary-method | DelayedSubset objects
summary-method | DelayedUnaryIsoOpStack objects
summary-method | DelayedUnaryIsoOpWithArgs objects
summary.DelayedAbind | DelayedAbind objects
summary.DelayedAperm | DelayedAperm objects
summary.DelayedNaryIsoOp | DelayedNaryIsoOp objects
summary.DelayedOp | DelayedOp objects
summary.DelayedSetDimnames | DelayedSetDimnames objects
summary.DelayedSubassign | DelayedSubassign objects
summary.DelayedSubset | DelayedSubset objects
summary.DelayedUnaryIsoOpStack | DelayedUnaryIsoOpStack objects
summary.DelayedUnaryIsoOpWithArgs | DelayedUnaryIsoOpWithArgs objects
supportedRealizationBackends | RealizationSink objects
sweep | Common operations on DelayedArray objects
sweep-method | Common operations on DelayedArray objects

## -- T --

table | Common operations on DelayedArray objects
table-method | Common operations on DelayedArray objects
tcrossprod | DelayedMatrix multiplication and cross-product
tcrossprod-method | DelayedMatrix multiplication and cross-product
tolower-method | Common operations on DelayedArray objects
tolower-method | Operate natively on SparseArraySeed objects
toupper-method | Common operations on DelayedArray objects
toupper-method | Operate natively on SparseArraySeed objects
type | DelayedArray objects
type-method | RleArraySeed objects
type<--method | Common operations on DelayedArray objects

## -- U --

unique | Common operations on DelayedArray objects
unique-method | Common operations on DelayedArray objects
unique.DelayedArray | Common operations on DelayedArray objects
updateObject-method | DelayedAbind objects
updateObject-method | DelayedAperm objects
updateObject-method | DelayedArray objects
updateObject-method | DelayedNaryIsoOp objects
updateObject-method | DelayedOp objects
updateObject-method | DelayedSetDimnames objects

## -- V --

viewportApply | blockApply() and family
viewportReduce | blockApply() and family

## -- W --

which-method | Common operations on DelayedArray objects
which-method | Operate natively on SparseArraySeed objects
write_block-method | RealizationSink objects
write_block-method | RleArray objects

## -- misc --

!-method | Common operations on DelayedArray objects
%*% | DelayedMatrix multiplication and cross-product
%*%-method | DelayedMatrix multiplication and cross-product
+-method | Common operations on DelayedArray objects
--method | Common operations on DelayedArray objects
[-method | DelayedArray objects
[<--method | DelayedArray objects
[[-method | DelayedArray objects