annotation_to_fasta	annotation_to_fasta
blaze	blaze
bulk_long_pipeline	bulk_long_pipeline
combine_sce	combine_sce
create_config	create_config
create_sce_from_dir	create_sce_from_dir
create_se_from_dir	create_se_from_dir
cutadapt	cutadapt
demultiplex_sockeye	demultiplex_sockeye
filter_annotation	filter_annotation
find_barcode	find_barcode
find_isoform	find_isoform
find_variants	find_variants
FLAMES	FLAMES
flexiplex	flexiplex
get_GRangesList	get_GRangesList
minimap2_align	minimap2_align
minimap2_realign	minimap2_realign
parse_gff_tree	parse_gff_tree
plot_coverage	plot_coverage
plot_demultiplex	plot_demultiplex
quantify_gene	quantify_gene
quantify_transcript	quantify_transcript
scmixology_lib10	scmixology_lib10
scmixology_lib10_transcripts	scmixology_lib10_transcripts
scmixology_lib90	scmixology_lib90
sc_DTU_analysis	sc_DTU_analysis
sc_heatmap_expression	sc_heatmap_expression
sc_long_multisample_pipeline	sc_long_multisample_pipeline
sc_long_pipeline	sc_long_pipeline
sc_mutations	sc_mutations
sc_reduce_dims	sc_reduce_dims
sc_umap_expression	sc_umap_expression
sys_which	sys_which
