Package: FunChIP
Type: Package
Title: Clustering and Alignment of ChIP-Seq peaks based on their shapes
Version: 1.30.0
Date: 2021-11-20
Depends: R (>= 3.5.0), GenomicRanges
Imports: shiny, fda, doParallel, GenomicAlignments, Rcpp, methods,
        foreach, parallel, GenomeInfoDb, Rsamtools, grDevices,
        graphics, stats, RColorBrewer
Author: Alice Parodi [aut, cre], Marco Morelli [aut, cre], Laura M. Sangalli [aut], Piercesare Secchi [aut], Simone Vantini [aut]
Maintainer: Alice Parodi <alicecarla.parodi@polimi.it>
biocViews: StatisticalMethod, Clustering, ChIPSeq
Description: Preprocessing and smoothing of ChIP-Seq peaks and efficient implementation of the k-mean alignment algorithm to classify them.
NeedsCompilation: yes
LinkingTo: Rcpp
License: Artistic-2.0
LazyData: TRUE
Packaged: 2024-05-01 04:52:51 UTC; biocbuild
PackageStatus: Deprecated
git_url: https://git.bioconductor.org/packages/FunChIP
git_branch: RELEASE_3_19
git_last_commit: 64da7f6
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-04-30
Built: R 4.4.0; aarch64-apple-darwin20; 2024-05-01 13:41:58 UTC; unix
