# Operating characteristics plus sample size and local fdr for microarray experiments

## Documentation for package ‘OCplus’ version 1.78.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

average.fdr | Average a two-dimensional local false discovery rate
CDF | Compute FDR for general scenarios
CDF.paired | Compute FDR for general scenarios
CDFmix | Compute FDR for general scenarios
CDFmix.paired | Compute FDR for general scenarios
DrawContourlines | Draw and label a set of pre-calculated isolines
EOC | Estimated or empirical FDR, sensitivity, etc as a function of cutoff level
FDR | Compute FDR for general scenarios
FDR.paired | Compute FDR for general scenarios
fdr1d | Compute classical local false discovery rate
fdr2d | Compute two-dimensional local false discovery rate
FDRp | Estimated or empirical FDR, sensitivity, etc as a function of cutoff level
MAsim | Simulate two-sample microarray data
MAsim.real | Simulate two-sample microarray data
MAsim.smyth | Simulate two-sample microarray data
MAsim.var | Simulate two-sample microarray data
OCshow | Show one ore several OC curves graphically
p0 | Display functions for local fdr output
PermNull | Compute multiple parallel t-statistics
plot.FDR.result | Plot the empirical FDR as a function of the cutoff level
plot.fdr1d.result | Plot univariate local false discovery output
plot.fdr2d.result | Plotting the bivariate local false discovery results
samplesize | FDR as a function of sample size
smooth1d | Smoothing a vector of counts
summary.fdr.result | Display functions for local fdr output
tMixture | Fit a mixture of t-distributions
TOC | Theoretical FDR and sensitivity as a function of cutoff level
topDE | Display functions for local fdr output
Tornadoplot | Plotting the bivariate local false discovery results
tstatistics | Compute multiple parallel t-statistics
Volcanoplot | Plotting the bivariate local false discovery results