# Package to Perform High Throughput Biological Screening

## Documentation for package ‘ScreenR’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

annotation_table | Table for the annotation of Barcode
barcode_lost | Count number of barcode lost
compute_data_table | Compute data Table
compute_metrics | Compute Metrics
compute_slope | Compute Slope of a Gene
count_mapped_reads | Count the number of mapped read
count_table | Table of the count table
create_edger_obj | Create edgeR Object
create_screenr_object | Create the ScreenR Object
filter_by_slope | Filter using the slope filter
filter_by_variance | Filter using the variance filter
find_camera_hit | Find Camera Hit
find_common_hit | Find common hit
find_roast_hit | Find Roast Hit
find_robust_zscore_hit | Title Find robust Z-score Hit
find_zscore_hit | Title Find Z-score Hit
get_annotation_table | Get ScreenR annotation table
get_annotation_table,screenr_object | Get ScreenR annotation table
get_annotation_table-method | Get ScreenR annotation table
get_count_table | Get ScreenR count table
get_count_table,screenr_object | Get ScreenR count table
get_count_table-method | Get ScreenR count table
get_data_table | Get ScreenR data_table
get_data_table,screenr_object | Get ScreenR data_table
get_data_table-method | Get ScreenR data_table
get_groups | Get ScreenR groups
get_groups,screenr_object | Get ScreenR groups
get_groups-method | Get ScreenR groups
get_normalized_count_table | Get ScreenR normalized_count_table
get_normalized_count_table,screenr_object | Get ScreenR normalized_count_table
get_normalized_count_table-method | Get ScreenR normalized_count_table
get_replicates | Get ScreenR replicates
get_replicates,screenr_object | Get ScreenR replicates
get_replicates-method | Get ScreenR replicates
mapped_reads | Mapped Reads
normalize_data | Normalize data
plot_barcode_hit | Plot barcode hit
plot_barcode_lost | Plot number of barcode lost
plot_barcode_lost_for_gene | Plot number of barcode lost for gene
plot_barcode_trend | Plot the trend over time of the barcodes
plot_boxplot | Plot Barcodes Hit
plot_common_hit | Plot common hit
plot_explained_variance | Plot the explained variance by the PC
plot_mapped_reads | Plot mapped reads
plot_mapped_reads_distribution | Plot the distribution of the mapped reads
plot_mds | Multidimensional Scaling Plot
plot_trend | Plot the trend hit gene
plot_zscore_distribution | Plot distribution Z-score
remove_all_zero_row | Remove rows that have zero count in all samples
screenr_object | Get ScreenR count table
screenr_object-class | Get ScreenR count table
set_annotation_table | Set ScreenR annotation table
set_annotation_table,screenr_object | Set ScreenR annotation table
set_annotation_table-method | Set ScreenR annotation table
set_count_table | Set ScreenR count table
set_count_table,screenr_object | Set ScreenR count table
set_count_table-method | Set ScreenR count table
set_data_table | Set ScreenR data_table
set_data_table,screenr_object | Set ScreenR data_table
set_data_table-method | Set ScreenR data_table
set_groups | Set ScreenR groups
set_groups,screenr_object | Set ScreenR groups
set_groups-method | Set ScreenR groups
set_normalized_count_table | Set ScreenR normalized_count_table
set_normalized_count_table,screenr_object | Set ScreenR normalized_count_table
set_normalized_count_table-method | Set ScreenR normalized_count_table
set_replicates | Set ScreenR replicates
set_replicates,screenr_object | Set ScreenR replicates
set_replicates-method | Set ScreenR replicates