BaitCapture	BaitCapture
BinMethylation	BinMethylation
CallContextMethylation	CallContextMethylation
CollapseStrands	CollapseStrands
CollapseStrandsSM	CollapseStrandsSM
ConversionRate	ConversionRate
CoverageFilter	CoverageFilter
DetectExperimentType	DetectExperimentType
FilterByConversionRate	FilterByConversionRate
FilterContextCytosines	FilterContextCytosines
FixOverhang	FixOverhang
GetQuasRprj	GetQuasRprj
GetSingleMolMethMat	GetSingleMolMethMat
HierarchicalClustering	HierarchicalClustering
OneTFstates	OneTFstates
PlotAvgSMF	PlotAvgSMF
PlotSingleMoleculeStack	PlotSingleMoleculeStack
PlotSingleSiteSMF	PlotSingleSiteSMF
PlotSM	PlotSM
SampleCorrelation	SampleCorrelation
SingleTFStateQuantificationPlot	SingleTFStateQuantificationPlot
SortReads	SortReads
SortReadsBySingleTF	SortReadsBySingleTF
SortReadsByTFCluster	SortReadsByTFCluster
StateQuantificationPlot	StateQuantificationPlot
TFPairStateQuantificationPlot	TFPairStateQuantificationPlot
TFpairStates	TFpairStates
