Package: exomePeak2
Type: Package
Title: Peak Calling and differential analysis for MeRIP-Seq
Version: 1.16.2
Authors@R: person("Zhen", "Wei", email = "zhen.wei10@icloud.com",
                  role = c("aut", "cre"))
Description: exomePeak2 provides peak detection and differential methylation for Methylated RNA Immunoprecipitation Sequencing (MeRIP-Seq) data. MeRIP-Seq is a commonly applied sequencing assay that measures the location and abundance of RNA modification sites under specific cellular conditions. The technique is sensitive to PCR amplification biases commonly found in NGS data. In addition, the efficiency of immunoprecipitation often varies between different IP samples. exomePeak2 can perform peak calling and differential analysis independent of GC content bias and IP efficiency changes. 
BugReports: https://github.com/ZW-xjtlu/exomePeak2/issues
License: Artistic-2.0
Imports:
        Rsamtools,GenomicAlignments,GenomicRanges,GenomicFeatures,DESeq2,ggplot2,mclust,BSgenome,Biostrings,GenomeInfoDb,BiocParallel,IRanges,S4Vectors,rtracklayer,methods,stats,utils,BiocGenerics,magrittr,speedglm,splines,txdbmaker
Depends: R (>= 3.5.0), SummarizedExperiment
biocViews: Sequencing, MethylSeq, RNASeq, Coverage,
        DifferentialMethylation, DifferentialPeakCalling, PeakDetection
Encoding: UTF-8
RoxygenNote: 7.3.2
Suggests: knitr, rmarkdown, BiocManager, BSgenome.Hsapiens.UCSC.hg19
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/exomePeak2
git_branch: RELEASE_3_19
git_last_commit: 236a855
git_last_commit_date: 2024-10-01
Repository: Bioconductor 3.19
Date/Publication: 2024-10-02
NeedsCompilation: no
Packaged: 2024-10-03 03:54:46 UTC; biocbuild
Author: Zhen Wei [aut, cre]
Maintainer: Zhen Wei <zhen.wei10@icloud.com>
Built: R 4.4.1; ; 2024-10-04 20:59:16 UTC; unix
