| BGWAS | Performs BGWAS analysis as in the BGWAS manuscript. |
| BICOSS | BICOSS for Gaussian Phenotypes |
| IEB | IEB for Gaussian Phenotypes |
| kinship | A. Thaliana Kinship matrix |
| SMA | Performs Single Marker Association tests for both Linear Mixed Models and Linear models. |
| SNPs | A. Thaliana Genotype matrix |
| Y | A. Thaliana Simulated Phenotype matrix |