| .mashData_2_qtle | Coercing mash data objects into QTLe objects |
| .mashFit_2_qtle | Coercing mash data objects into QTLe objects |
| betas | Named assay getters and setters |
| betas-method | Named assay getters and setters |
| betas<- | Named assay getters and setters |
| betas<--method | Named assay getters and setters |
| cbind-method | Combining QTLExperiment objects |
| coerce-method | An S4 class to represent QTL summary statistics. |
| colData-method | Internal QTLExperiment functions |
| errors | Named assay getters and setters |
| errors-method | Named assay getters and setters |
| errors<- | Named assay getters and setters |
| errors<--method | Named assay getters and setters |
| feature_id | Named rowData getters and setters |
| feature_id-method | Named rowData getters and setters |
| feature_id<- | Named rowData getters and setters |
| feature_id<--method | Named rowData getters and setters |
| int_colData | Internal QTLExperiment functions |
| int_colData-method | Internal QTLExperiment functions |
| int_colData<- | Internal QTLExperiment functions |
| int_colData<--method | Internal QTLExperiment functions |
| int_metadata | Internal QTLExperiment functions |
| int_metadata-method | Internal QTLExperiment functions |
| int_metadata<- | Internal QTLExperiment functions |
| int_metadata<--method | Internal QTLExperiment functions |
| int_rowData | Internal QTLExperiment functions |
| int_rowData-method | Internal QTLExperiment functions |
| int_rowData<- | Internal QTLExperiment functions |
| int_rowData<--method | Internal QTLExperiment functions |
| lfsrs | Named assay getters and setters |
| lfsrs-method | Named assay getters and setters |
| lfsrs<- | Named assay getters and setters |
| lfsrs<--method | Named assay getters and setters |
| mainExpName | Return the name of a QTLExperiment object. |
| mainExpName-method | Return the name of a QTLExperiment object. |
| mainExpName<- | Return the name of a QTLExperiment object. |
| mainExpName<--method | Return the name of a QTLExperiment object. |
| mash2qtle | Coercing mash data objects into QTLe objects |
| mockMASHR | Mock data for the QTLExperiment object |
| mockMASHR_FIT | Mock data for the QTLExperiment object |
| mockQTLE | Mock data for the QTLExperiment object |
| mockSummaryStats | Mock data for the QTLExperiment object |
| objectVersion | Return the version of a QTLExperiment object |
| objectVersion-method | Return the version of a QTLExperiment object |
| parallel_slot_names-method | Internal QTLExperiment functions |
| pvalues | Named assay getters and setters |
| pvalues-method | Named assay getters and setters |
| pvalues<- | Named assay getters and setters |
| pvalues<--method | Named assay getters and setters |
| qtle-assays | Named assay getters and setters |
| QTLe-coerce | Coercing mash data objects into QTLe objects |
| qtle-col_ids | Named colData getters and setters |
| QTLe-combine | Combining QTLExperiment objects |
| QTLe-internals | Internal QTLExperiment functions |
| QTLe-name | Return the name of a QTLExperiment object. |
| QTLe-recover | Recover QTLExperiment IDs |
| qtle-row_ids | Named rowData getters and setters |
| QTLe-subset | Subsetting and replacing data in QTLExperiment objects |
| QTLe-version | Return the version of a QTLExperiment object |
| QTLExperiment | An S4 class to represent QTL summary statistics. |
| QTLExperiment-class | An S4 class to represent QTL summary statistics. |
| rbind-method | Combining QTLExperiment objects |
| recover_qtle_ids | Recover QTLExperiment IDs |
| rowData-method | Internal QTLExperiment functions |
| state_id | Named colData getters and setters |
| state_id-method | Named colData getters and setters |
| state_id<- | Named colData getters and setters |
| state_id<--method | Named colData getters and setters |
| sumstats2qtle | Coerce QTL summary statistics into a QTLExperiment object |
| updateObject | Update a QTLExperiment object |
| updateObject-method | Update a QTLExperiment object |
| variant_id | Named rowData getters and setters |
| variant_id-method | Named rowData getters and setters |
| variant_id<- | Named rowData getters and setters |
| variant_id<--method | Named rowData getters and setters |
| [-method | Subsetting and replacing data in QTLExperiment objects |
| [<--method | Subsetting and replacing data in QTLExperiment objects |