A B C D E F I J L M N P R S T U misc
| acquisitionNum-method | Mass spectrometry data backends |
| acquisitionNum-method | Base MsBackend class providing data caching mechanism |
| acquisitionNum-method | The Spectra class to manage and access MS data |
| addProcessing-method | The Spectra class to manage and access MS data |
| applyProcessing | The Spectra class to manage and access MS data |
| backendBpparam | Mass spectrometry data backends |
| backendBpparam-method | Mass spectrometry data backends |
| backendBpparam-method | The Spectra class to manage and access MS data |
| backendInitialize | Mass spectrometry data backends |
| backendInitialize-method | Mass spectrometry data backends |
| backendInitialize-method | Base MsBackend class providing data caching mechanism |
| backendMerge-method | Mass spectrometry data backends |
| backendParallelFactor-method | Mass spectrometry data backends |
| bin-method | The Spectra class to manage and access MS data |
| c-method | The Spectra class to manage and access MS data |
| centroided-method | Mass spectrometry data backends |
| centroided-method | Base MsBackend class providing data caching mechanism |
| centroided-method | The Spectra class to manage and access MS data |
| centroided<--method | Mass spectrometry data backends |
| centroided<--method | Base MsBackend class providing data caching mechanism |
| centroided<--method | The Spectra class to manage and access MS data |
| chunkapply | Apply a function stepwise to chunks of data |
| class:MsBackend | Mass spectrometry data backends |
| collisionEnergy-method | Mass spectrometry data backends |
| collisionEnergy-method | Base MsBackend class providing data caching mechanism |
| collisionEnergy-method | The Spectra class to manage and access MS data |
| collisionEnergy<--method | Mass spectrometry data backends |
| collisionEnergy<--method | Base MsBackend class providing data caching mechanism |
| collisionEnergy<--method | The Spectra class to manage and access MS data |
| combinePeaks | The Spectra class to manage and access MS data |
| combinePeaks-method | The Spectra class to manage and access MS data |
| combinePeaksData | Combine peaks with similar m/z across spectra |
| combineSpectra | The Spectra class to manage and access MS data |
| compareSpectra-method | The Spectra class to manage and access MS data |
| computeMzDeltas | MZ delta Quality Control |
| concatenateSpectra | The Spectra class to manage and access MS data |
| containsMz-method | The Spectra class to manage and access MS data |
| containsNeutralLoss-method | The Spectra class to manage and access MS data |
| coreSpectraVariables | The Spectra class to manage and access MS data |
| countIdentifications | Count the number of identifications per scan |
| dataOrigin-method | Mass spectrometry data backends |
| dataOrigin-method | Base MsBackend class providing data caching mechanism |
| dataOrigin-method | The Spectra class to manage and access MS data |
| dataOrigin<--method | Mass spectrometry data backends |
| dataOrigin<--method | Base MsBackend class providing data caching mechanism |
| dataOrigin<--method | The Spectra class to manage and access MS data |
| dataStorage-method | Mass spectrometry data backends |
| dataStorage-method | Base MsBackend class providing data caching mechanism |
| dataStorage-method | The Spectra class to manage and access MS data |
| dataStorage<--method | Mass spectrometry data backends |
| deisotopeSpectra | The Spectra class to manage and access MS data |
| dropNaSpectraVariables-method | Mass spectrometry data backends |
| dropNaSpectraVariables-method | The Spectra class to manage and access MS data |
| entropy-method | The Spectra class to manage and access MS data |
| estimatePrecursorIntensity | Estimate Precursor Intensities |
| estimatePrecursorMz | Estimating precursor m/z valus for DDA data |
| export-method | Mass spectrometry data backends |
| export-method | The Spectra class to manage and access MS data |
| fft_spectrum | Fast fourier transform artefact filter |
| filterAcquisitionNum-method | Mass spectrometry data backends |
| filterAcquisitionNum-method | The Spectra class to manage and access MS data |
| filterDataOrigin-method | Mass spectrometry data backends |
| filterDataOrigin-method | The Spectra class to manage and access MS data |
| filterDataStorage-method | Mass spectrometry data backends |
| filterDataStorage-method | The Spectra class to manage and access MS data |
| filterEmptySpectra-method | Mass spectrometry data backends |
| filterEmptySpectra-method | The Spectra class to manage and access MS data |
| filterFourierTransformArtefacts | Fast fourier transform artefact filter |
| filterFourierTransformArtefacts-method | The Spectra class to manage and access MS data |
| filterIntensity-method | The Spectra class to manage and access MS data |
| filterIsolationWindow-method | Mass spectrometry data backends |
| filterIsolationWindow-method | The Spectra class to manage and access MS data |
| filterMsLevel-method | Mass spectrometry data backends |
| filterMsLevel-method | The Spectra class to manage and access MS data |
| filterMzRange-method | The Spectra class to manage and access MS data |
| filterMzValues-method | The Spectra class to manage and access MS data |
| filterPolarity-method | Mass spectrometry data backends |
| filterPolarity-method | The Spectra class to manage and access MS data |
| filterPrecursorCharge-method | Mass spectrometry data backends |
| filterPrecursorCharge-method | The Spectra class to manage and access MS data |
| filterPrecursorIsotopes | The Spectra class to manage and access MS data |
| filterPrecursorMaxIntensity | The Spectra class to manage and access MS data |
| filterPrecursorMz-method | Mass spectrometry data backends |
| filterPrecursorMz-method | The Spectra class to manage and access MS data |
| filterPrecursorMzRange-method | Mass spectrometry data backends |
| filterPrecursorMzRange-method | The Spectra class to manage and access MS data |
| filterPrecursorMzValues-method | Mass spectrometry data backends |
| filterPrecursorMzValues-method | The Spectra class to manage and access MS data |
| filterPrecursorPeaks | The Spectra class to manage and access MS data |
| filterPrecursorScan-method | Mass spectrometry data backends |
| filterPrecursorScan-method | The Spectra class to manage and access MS data |
| filterRanges-method | Mass spectrometry data backends |
| filterRanges-method | The Spectra class to manage and access MS data |
| filterRt-method | Mass spectrometry data backends |
| filterRt-method | The Spectra class to manage and access MS data |
| filterValues-method | Mass spectrometry data backends |
| filterValues-method | The Spectra class to manage and access MS data |
| intensity-method | Mass spectrometry data backends |
| intensity-method | Base MsBackend class providing data caching mechanism |
| intensity-method | The Spectra class to manage and access MS data |
| intensity<--method | Mass spectrometry data backends |
| ionCount-method | Mass spectrometry data backends |
| ionCount-method | Base MsBackend class providing data caching mechanism |
| ionCount-method | The Spectra class to manage and access MS data |
| isCentroided-method | Mass spectrometry data backends |
| isCentroided-method | The Spectra class to manage and access MS data |
| isEmpty-method | Mass spectrometry data backends |
| isEmpty-method | Base MsBackend class providing data caching mechanism |
| isEmpty-method | The Spectra class to manage and access MS data |
| isolationWindowLowerMz-method | Mass spectrometry data backends |
| isolationWindowLowerMz-method | Base MsBackend class providing data caching mechanism |
| isolationWindowLowerMz-method | The Spectra class to manage and access MS data |
| isolationWindowLowerMz<--method | Mass spectrometry data backends |
| isolationWindowLowerMz<--method | Base MsBackend class providing data caching mechanism |
| isolationWindowLowerMz<--method | The Spectra class to manage and access MS data |
| isolationWindowTargetMz-method | Mass spectrometry data backends |
| isolationWindowTargetMz-method | Base MsBackend class providing data caching mechanism |
| isolationWindowTargetMz-method | The Spectra class to manage and access MS data |
| isolationWindowTargetMz<--method | Mass spectrometry data backends |
| isolationWindowTargetMz<--method | Base MsBackend class providing data caching mechanism |
| isolationWindowTargetMz<--method | The Spectra class to manage and access MS data |
| isolationWindowUpperMz-method | Mass spectrometry data backends |
| isolationWindowUpperMz-method | Base MsBackend class providing data caching mechanism |
| isolationWindowUpperMz-method | The Spectra class to manage and access MS data |
| isolationWindowUpperMz<--method | Mass spectrometry data backends |
| isolationWindowUpperMz<--method | Base MsBackend class providing data caching mechanism |
| isolationWindowUpperMz<--method | The Spectra class to manage and access MS data |
| isReadOnly-method | Mass spectrometry data backends |
| joinPeaks | Join (map) peaks of two spectra |
| joinPeaksGnps | Join (map) peaks of two spectra |
| joinPeaksNone | Join (map) peaks of two spectra |
| joinSpectraData | The Spectra class to manage and access MS data |
| length-method | Mass spectrometry data backends |
| length-method | Base MsBackend class providing data caching mechanism |
| length-method | The Spectra class to manage and access MS data |
| lengths-method | Mass spectrometry data backends |
| lengths-method | Base MsBackend class providing data caching mechanism |
| lengths-method | The Spectra class to manage and access MS data |
| MsBackend | Mass spectrometry data backends |
| MsBackend-class | Mass spectrometry data backends |
| MsBackendCached | Base MsBackend class providing data caching mechanism |
| MsBackendCached-class | Base MsBackend class providing data caching mechanism |
| MsBackendDataFrame | Mass spectrometry data backends |
| MsBackendDataFrame-class | Mass spectrometry data backends |
| MsBackendHdf5Peaks | Mass spectrometry data backends |
| MsBackendMemory | Mass spectrometry data backends |
| MsBackendMemory-class | Mass spectrometry data backends |
| MsBackendMzR | Mass spectrometry data backends |
| MsBackendMzR-class | Mass spectrometry data backends |
| msLevel-method | Mass spectrometry data backends |
| msLevel-method | Base MsBackend class providing data caching mechanism |
| msLevel-method | The Spectra class to manage and access MS data |
| mz-method | Mass spectrometry data backends |
| mz-method | Base MsBackend class providing data caching mechanism |
| mz-method | The Spectra class to manage and access MS data |
| mz<--method | Mass spectrometry data backends |
| neutralLoss | Calculate Neutral Loss Spectra |
| neutralLoss-method | Calculate Neutral Loss Spectra |
| peaksData-method | Mass spectrometry data backends |
| peaksData-method | The Spectra class to manage and access MS data |
| peaksData<--method | Mass spectrometry data backends |
| peaksVariables-method | Mass spectrometry data backends |
| peaksVariables-method | The Spectra class to manage and access MS data |
| pickPeaks-method | The Spectra class to manage and access MS data |
| plotMzDelta | MZ delta Quality Control |
| plotSpectra | Plotting Spectra |
| plotSpectraMirror | Plotting Spectra |
| plotSpectraMirror-method | Plotting Spectra |
| plotSpectraOverlay | Plotting Spectra |
| polarity-method | Mass spectrometry data backends |
| polarity-method | Base MsBackend class providing data caching mechanism |
| polarity-method | The Spectra class to manage and access MS data |
| polarity<--method | Mass spectrometry data backends |
| polarity<--method | Base MsBackend class providing data caching mechanism |
| polarity<--method | The Spectra class to manage and access MS data |
| precScanNum-method | Mass spectrometry data backends |
| precScanNum-method | The Spectra class to manage and access MS data |
| precursorCharge-method | Mass spectrometry data backends |
| precursorCharge-method | Base MsBackend class providing data caching mechanism |
| precursorCharge-method | The Spectra class to manage and access MS data |
| precursorIntensity-method | Mass spectrometry data backends |
| precursorIntensity-method | Base MsBackend class providing data caching mechanism |
| precursorIntensity-method | The Spectra class to manage and access MS data |
| precursorMz-method | Mass spectrometry data backends |
| precursorMz-method | Base MsBackend class providing data caching mechanism |
| precursorMz-method | The Spectra class to manage and access MS data |
| PrecursorMzParam | Calculate Neutral Loss Spectra |
| processingChunkFactor | Parallel and chunk-wise processing of 'Spectra' |
| processingChunkSize | Parallel and chunk-wise processing of 'Spectra' |
| processingChunkSize<- | Parallel and chunk-wise processing of 'Spectra' |
| processingLog | The Spectra class to manage and access MS data |
| reduceSpectra | The Spectra class to manage and access MS data |
| replaceIntensitiesBelow-method | The Spectra class to manage and access MS data |
| reset-method | Mass spectrometry data backends |
| reset-method | The Spectra class to manage and access MS data |
| rtime-method | Mass spectrometry data backends |
| rtime-method | Base MsBackend class providing data caching mechanism |
| rtime-method | The Spectra class to manage and access MS data |
| rtime<--method | Mass spectrometry data backends |
| rtime<--method | Base MsBackend class providing data caching mechanism |
| rtime<--method | The Spectra class to manage and access MS data |
| scalePeaks | The Spectra class to manage and access MS data |
| scanIndex-method | Mass spectrometry data backends |
| scanIndex-method | Base MsBackend class providing data caching mechanism |
| scanIndex-method | The Spectra class to manage and access MS data |
| selectSpectraVariables-method | Mass spectrometry data backends |
| selectSpectraVariables-method | Base MsBackend class providing data caching mechanism |
| selectSpectraVariables-method | The Spectra class to manage and access MS data |
| setBackend-method | The Spectra class to manage and access MS data |
| show-method | Base MsBackend class providing data caching mechanism |
| smooth-method | The Spectra class to manage and access MS data |
| smoothed-method | Mass spectrometry data backends |
| smoothed-method | Base MsBackend class providing data caching mechanism |
| smoothed-method | The Spectra class to manage and access MS data |
| smoothed<--method | Mass spectrometry data backends |
| smoothed<--method | Base MsBackend class providing data caching mechanism |
| smoothed<--method | The Spectra class to manage and access MS data |
| Spectra | The Spectra class to manage and access MS data |
| Spectra-class | The Spectra class to manage and access MS data |
| Spectra-method | The Spectra class to manage and access MS data |
| spectra-plotting | Plotting Spectra |
| spectraData-method | Mass spectrometry data backends |
| spectraData-method | Base MsBackend class providing data caching mechanism |
| spectraData-method | The Spectra class to manage and access MS data |
| spectraData<--method | Mass spectrometry data backends |
| spectraData<--method | Base MsBackend class providing data caching mechanism |
| spectraData<--method | The Spectra class to manage and access MS data |
| spectraNames-method | Mass spectrometry data backends |
| spectraNames-method | The Spectra class to manage and access MS data |
| spectraNames<--method | Mass spectrometry data backends |
| spectraNames<--method | The Spectra class to manage and access MS data |
| spectrapply-method | The Spectra class to manage and access MS data |
| spectraVariableMapping | Mapping between spectra variables and data file fields |
| spectraVariables-method | Mass spectrometry data backends |
| spectraVariables-method | Base MsBackend class providing data caching mechanism |
| spectraVariables-method | The Spectra class to manage and access MS data |
| split-method | Mass spectrometry data backends |
| split-method | The Spectra class to manage and access MS data |
| supportsSetBackend | Mass spectrometry data backends |
| supportsSetBackend-method | Mass spectrometry data backends |
| tic-method | Mass spectrometry data backends |
| tic-method | The Spectra class to manage and access MS data |
| uniqueMsLevels | The Spectra class to manage and access MS data |
| uniqueMsLevels-method | Mass spectrometry data backends |
| uniqueMsLevels-method | The Spectra class to manage and access MS data |
| $-method | Mass spectrometry data backends |
| $-method | Base MsBackend class providing data caching mechanism |
| $-method | The Spectra class to manage and access MS data |
| $<--method | Mass spectrometry data backends |
| $<--method | Base MsBackend class providing data caching mechanism |
| $<--method | The Spectra class to manage and access MS data |
| [-method | Mass spectrometry data backends |
| [-method | Base MsBackend class providing data caching mechanism |
| [-method | The Spectra class to manage and access MS data |
| [[-method | Mass spectrometry data backends |
| [[-method | The Spectra class to manage and access MS data |
| [[<--method | Mass spectrometry data backends |
| [[<--method | The Spectra class to manage and access MS data |