| aggregateTestEnrichments | Aggregate test enrichment results |
| annoProbes | Annotate Probe IDs using KYCG databases |
| buildGeneDBs | build gene-probe association database |
| dbStats | dbStats aggregates methylation of a given betas matrix over specified database set features |
| getDBs | Get databases by full or partial names of the database group(s) |
| listDBGroups | List database group names |
| testEnrichment | testEnrichment tests for the enrichment of a set of probes (query set) in a number of features (database sets). |
| testEnrichmentFisher | testEnrichmentFisher uses Fisher's exact test to estimate the association between two categorical variables. |
| testEnrichmentSEA | uses the GSEA-like test to estimate the association of a categorical variable against a continuous variable. |
| testEnrichmentSpearman | testEnrichmentSpearman uses the Spearman statistical test to estimate the association between two continuous variables. |
| testGO | tests Gene Ontology of genes overlapping CpG query |
| testProbeProximity | testProbeProximity tests if a query set of probes share closer genomic proximity than if randomly distributed |