| miaViz-package | miaViz - Microbiome Analysis Plotting and Visualization |
| colTreeData | Adding information to tree data in 'TreeSummarizedExperiment' |
| colTreeData-method | Adding information to tree data in 'TreeSummarizedExperiment' |
| colTreeData<- | Adding information to tree data in 'TreeSummarizedExperiment' |
| colTreeData<--method | Adding information to tree data in 'TreeSummarizedExperiment' |
| col_graph | miaViz example data |
| combineTreeData | Adding information to tree data in 'TreeSummarizedExperiment' |
| combineTreeData-method | Adding information to tree data in 'TreeSummarizedExperiment' |
| mia-datasets | miaViz example data |
| mia-plot-args | Additional arguments for plotting |
| miaViz | miaViz - Microbiome Analysis Plotting and Visualization |
| plotAbundance | Plotting abundance data |
| plotAbundance-method | Plotting abundance data |
| plotAbundanceDensity | Plot abundance density |
| plotAbundanceDensity-method | Plot abundance density |
| plotCCA | Plot RDA or CCA object |
| plotCCA-method | Plot RDA or CCA object |
| plotColGraph | Plotting igraph objects with information from a 'SummarizedExperiment' |
| plotColGraph-method | Plotting igraph objects with information from a 'SummarizedExperiment' |
| plotColTile | Plot factor data as tiles |
| plotColTile-method | Plot factor data as tiles |
| plotColTree | Plotting tree information enriched with information |
| plotColTree-method | Plotting tree information enriched with information |
| plotDMN | Plotting Dirichlet-Multinomial Mixture Model data |
| plotDMNFit | Plotting Dirichlet-Multinomial Mixture Model data |
| plotDMNFit-method | Plotting Dirichlet-Multinomial Mixture Model data |
| plotFeaturePrevalence | Plot prevalence information |
| plotFeaturePrevalence-method | Plot prevalence information |
| plotGraph | Plotting igraph objects with information from a 'SummarizedExperiment' |
| plotPrevalence | Plot prevalence information |
| plotPrevalence-method | Plot prevalence information |
| plotPrevalentAbundance | Plot prevalence information |
| plotPrevalentAbundance-method | Plot prevalence information |
| plotRDA | Plot RDA or CCA object |
| plotRDA-method | Plot RDA or CCA object |
| plotRowGraph | Plotting igraph objects with information from a 'SummarizedExperiment' |
| plotRowGraph-method | Plotting igraph objects with information from a 'SummarizedExperiment' |
| plotRowTile | Plot factor data as tiles |
| plotRowTile-method | Plot factor data as tiles |
| plotRowTree | Plotting tree information enriched with information |
| plotRowTree-method | Plotting tree information enriched with information |
| plotSeries | Plot Series |
| plotSeries-method | Plot Series |
| plotTaxaPrevalence | Plot prevalence information |
| plotTaxaPrevalence-method | Plot prevalence information |
| plotTree | Plotting tree information enriched with information |
| rowTreeData | Adding information to tree data in 'TreeSummarizedExperiment' |
| rowTreeData-method | Adding information to tree data in 'TreeSummarizedExperiment' |
| rowTreeData<- | Adding information to tree data in 'TreeSummarizedExperiment' |
| rowTreeData<--method | Adding information to tree data in 'TreeSummarizedExperiment' |
| row_graph | miaViz example data |
| row_graph_order | miaViz example data |
| treeData | Adding information to tree data in 'TreeSummarizedExperiment' |